Mannheimia haemolytica 89010807N lktA-: VK67_03480
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Entry
VK67_03480 CDS
T03750
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mhay
Mannheimia haemolytica 89010807N lktA-
Pathway
mhay03030
DNA replication
mhay03410
Base excision repair
mhay03420
Nucleotide excision repair
mhay03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mhay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VK67_03480 (ligA)
03410 Base excision repair
VK67_03480 (ligA)
03420 Nucleotide excision repair
VK67_03480 (ligA)
03430 Mismatch repair
VK67_03480 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mhay03032
]
VK67_03480 (ligA)
03400 DNA repair and recombination proteins [BR:
mhay03400
]
VK67_03480 (ligA)
Enzymes [BR:
mhay01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VK67_03480 (ligA)
DNA replication proteins [BR:
mhay03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VK67_03480 (ligA)
DNA repair and recombination proteins [BR:
mhay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VK67_03480 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VK67_03480 (ligA)
MMR (mismatch excision repair)
DNA ligase
VK67_03480 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VK67_03480 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
HHH_3
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AKA13385
UniProt:
A0A547ESZ4
LinkDB
All DBs
Position
complement(684417..686474)
Genome browser
AA seq
685 aa
AA seq
DB search
MSLFNQTSLFEENATPELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLE
WQHPELISADSPTQRVGAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYITASP
SQLEFCCEPKLDGLAVSILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPP
ARLEVRGEVFMPQSGFNELNEKALAKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAY
GIGVYESDDELPATHFERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDI
DGTVLKVNDIALQEQLGFISRSSRWAIAYKFPAQEEMTILKEVDFQVGRTGAITPVAKLE
PVFVAGVTVSNATLHNGDEIERLGIVIGDTVIIRRAGDVIPQITGVMLERRPENAKKIEF
PTACPICHSAVTRVEGEAVARCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLIEQLMA
RELIETPADLFKLDHTTLMRLERMGEKSAQNALNSIEKAKNTTLPRFLFSLGIREVGEAT
ALNLANHFGSLEAIRQATFEQLKEVQDVGEVVANRIVSFWQEPHNVEVVEDLIAQGVRWE
NVVKAEIVDNPLKDKNVVLTGTLTQLTRDEAKALLQSLGCKVSGSVSSKTDYLIAGEKAG
SKLAKAQELGIQILSEQQFIELTQH
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgtctttatttaaccaaacctctttatttgaagagaatgccacgcccgagttagtcgag
aaaatcgaaactattcgccaaacattgcgtcaatacgagtatgaatatcacgttttagat
aacccaagcgtacccgatgccgaatacgaccgtttaatgaacgagctgaaaaatctggaa
tggcagcacccggaactgattagtgccgactcgccgactcaacgggttggtgccaaaccg
ctggcaggctttgctcaagtcacccacgaaatccctatgctttcgttggataatgccttc
tccgatgaagacttagatggctttttacgccgtatggaaagctatatcaccgcctctcct
tcgcaactggaattttgttgcgaacctaaattagacggcttggcagtgagtattttatac
gaaaacggtatacttacccgagctgcaacccgtggcgatggcacaaccggcgaagaaatt
accgctaatatccgcaccattcgcaatattccgttaaagctcaacacgactaatccacct
gctcgattagaggtgcgaggcgaagtctttatgccacaatcaggctttaatgagctgaat
gagaaagccttagctaaaggcgaaaaaacctttgccaaccctcgcaatgccgcagcaggt
tcgcttcgccagttagatccgaaaatcacccgccagcgtccgttagtgctgaatgcctac
ggaattggggtgtatgaaagcgatgacgaactgccagccacccatttcgaacgtttgcaa
tggctgaaatcgcttggtattcctgtaaataatgaaatccgcttggttcaaggcaaagct
gctctcttggcttattatgcggagattcaggctaaacgcccaacattaggctatgatatt
gatggcacagtattgaaagtaaatgacattgccctacaagagcaactcgggtttatctct
cgctcctctcgttgggcgattgcgtataaatttccggctcaagaagaaatgacaatcctc
aaagaagtggacttccaagtgggaagaacaggggcaatcacccctgtggcgaaattagag
cctgtttttgtcgctggcgtaacggtaagtaacgcaacgctacacaacggtgatgaaatc
gagcgacttggtattgtgattggcgatacggtaattattcgccgagcgggcgatgtaatt
ccgcaaattacaggcgtgatgttagaacgccgcccggaaaatgcaaaaaaaattgaattt
ccgaccgcttgtcctatctgtcactccgctgttactcgggtagaaggcgaggcagtagca
cgctgtaccggtggtttattctgcgaagctcaacgtaaagaagccttgaaacatttcgtt
tcacgcaaggcaatggatattgacggcgtaggcgaaaaactaatcgagcagttaatggct
cgagagctgattgaaacgcctgccgatctgtttaagctcgatcacactaccctaatgcga
ttagagcgaatgggggaaaaatcggctcaaaatgctctcaacagcatcgaaaaagcaaaa
aacactactcttcctcgctttttattctcgttaggtattcgtgaagtgggcgaggcaacc
gctctcaacttagccaaccattttggtagcttagaggcgatccgccaagccacttttgag
caattaaaagaagtgcaagatgtgggcgaggttgttgccaaccgtattgtcagcttctgg
caagaaccgcataatgtggaagtggtggaagatttgatcgctcaaggtgtacgttgggaa
aacgttgtgaaagccgaaattgtagataacccgttaaaagataaaaacgtggtcttaacc
ggcacgctaacccagctcacccgtgatgaagccaaagccctattacaaagtttgggctgt
aaagtctccggctcggtttccagcaaaaccgattacttaatcgccggcgaaaaagccggt
tccaagctggcaaaagctcaagagttgggaattcagattttaagcgagcaacaatttatt
gagcttactcaacattaa
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integrated database retrieval system
