Marinobacter nauticus ATCC 49840: MARHY2111
Help
Entry
MARHY2111 CDS
T02083
Symbol
ligA
Name
(GenBank) DNA ligase, NAD(+)-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mhc
Marinobacter nauticus ATCC 49840
Pathway
mhc03030
DNA replication
mhc03410
Base excision repair
mhc03420
Nucleotide excision repair
mhc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mhc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MARHY2111 (ligA)
03410 Base excision repair
MARHY2111 (ligA)
03420 Nucleotide excision repair
MARHY2111 (ligA)
03430 Mismatch repair
MARHY2111 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mhc03032
]
MARHY2111 (ligA)
03400 DNA repair and recombination proteins [BR:
mhc03400
]
MARHY2111 (ligA)
Enzymes [BR:
mhc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MARHY2111 (ligA)
DNA replication proteins [BR:
mhc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MARHY2111 (ligA)
DNA repair and recombination proteins [BR:
mhc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MARHY2111 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MARHY2111 (ligA)
MMR (mismatch excision repair)
DNA ligase
MARHY2111 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MARHY2111 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
RUBY_RBDX
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
CCG95586
LinkDB
All DBs
Position
complement(2149009..2151045)
Genome browser
AA seq
678 aa
AA seq
DB search
MTNVPETIRKRVDSLRATLEDHNYYYYVQDDPRIPDAEYDRLFRELQKLEAEHPELATED
SPTRRVGSSAETSFEEVTHRLPMLSLDNAFSEDELRDFDRRVRDRLGEDGAIEYVCEPKL
DGLAVSLHYENGTLTRAATRGDGYTGEDITANIRTIPSVPLKLRGSGYPDLVEVRGEVYM
PRAGFEKLNERLAEQGEKTFVNPRNAAAGSLRQKKSTVTARRPLELCAYSMAVTDESVLP
ETHWDSLQLVRDWGFRINPEMRKAEGVEACLDAYNELMAKRDSLPYEIDGIVFKVNRLDL
QQELGFVSRAPRWAIAHKFPAQEELTIIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNA
TLHNMDEIRRLDVHIGDTVFIRRAGDVIPQVVKVVPEKRPAMAPMVEMPEHCPVCGSDIV
QIEGEAVARCSGGLYCPAQRKEAIRHYASRKAMDIEGLGDRLIEMLVDEGMVSTVADLYR
LTKFQIASLERMGDKSAANLTAAIDRSREPVLWRFLYALGIREVGEATAKGLAAHFGTLE
AISEADEESLQTVPDVGPIVAGHIRSFFDQPHNQETLAALKKAGVTWQEEHVLSVDEQPL
SGQTWVLTGTLSGMTRDQAKEKLEQLGAKVAGSVSKKTACVVAGEAAGSKLAKAEQLGVP
VLDEAGLADLLRKHGIEV
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacgttcccgaaactatccggaagcgcgtggactctctgcgcgctaccctcgaa
gaccacaattattactactacgttcaggacgaccccaggatccccgacgccgagtacgat
cggttgtttcgggagttgcagaagctggaagccgaacacccggaactggcgacagaggat
tcgccgacccgccgggtaggcagcagcgctgagaccagtttcgaggaagtcacccaccgc
ctgccgatgctgtcgctggataatgccttcagtgaggacgagctacgggattttgaccgt
cgggttcgtgaccggttgggagaggacggggccattgagtatgtctgtgagcccaagctg
gacggtctcgccgtcagcctgcactacgaaaacggcaccttaacccgtgccgcgacccgg
ggtgacggctataccggcgaagatatcaccgccaatattcgtaccattccgtcggtacct
ctcaagctgcgtggctcgggatatccggatcttgttgaggtccgcggcgaggtgtacatg
ccccgtgccggtttcgagaagctgaatgagcgcctggcagagcagggcgagaagaccttt
gtaaatccccgcaacgctgctgccggaagcctgcgccagaagaaatcgacggtaaccgcc
aggcgcccgttggaactgtgtgcctacagtatggcggtaactgatgaaagtgtactgcct
gaaactcattgggacagtttgcagcttgtcagggactgggggttccggatcaatccggaa
atgcgcaaggccgagggtgtggaagcctgtctggatgcctacaacgaattgatggccaag
cgcgacagcttgccctatgaaatcgatggcattgtgttcaaggtaaaccgtctcgatctt
cagcaggagctgggttttgtttcccgcgccccgcgttgggcgatcgcccacaagtttccg
gcccaggaagagctgacgatcattgaagatgtggaattccaggtgggtcgaaccggagca
gtgacaccggtagcccgcctgaagccggtgtttgtcggcggtgtgactgtgtcaaatgca
accctgcacaatatggatgagatccgacgcctggacgttcatatcggcgatacggtgttc
attcgccgggccggggatgttatcccgcaggtagtgaaggtggtgccggaaaagcgcccg
gccatggcgccgatggttgaaatgcccgagcactgcccggtctgcggctcggatattgtc
cagattgagggagaggccgttgcgcggtgttcgggcggcctgtattgcccggctcagcgc
aaggaagcgatccggcattatgcctcccggaaggccatggatattgagggccttggggac
cggctgatcgagatgttggtggacgaaggtatggtcagcaccgtggcggatctttaccgg
ctgacgaaattccagatcgccagtctggagcgtatgggcgacaaatctgcggcaaatctt
actgccgccatcgatcgctcccgtgaaccggtgctttggcggttcctttatgcacttggt
attcgtgaagtgggtgaggcgaccgccaaggggctggcagcccatttcggcacgctggaa
gcgatttccgaagcggatgaagagtctctccagacggtgcctgatgtcgggcctattgtg
gccggtcatatccggagcttctttgatcagccccataatcaggaaacacttgcggcgctg
aaaaaggccggcgtcacctggcaggaagagcatgtgctgtcggtcgatgaacagcctctc
agtggtcagacctgggtattgactggcactctctcaggcatgacacgggatcaggccaag
gaaaagcttgagcagctcggtgccaaggttgctggtagtgtctccaaaaaaaccgcctgc
gttgtcgcaggcgaggccgccggctctaaactggccaaggctgagcagttgggggtgcct
gtgttggatgaggcagggctggccgacctgctgcggaaacatggtatcgaggtctga
DBGET
integrated database retrieval system
