Mycolicibacterium helvum: MHEL_42080
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Entry
MHEL_42080 CDS
T07064
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mhev
Mycolicibacterium helvum
Pathway
mhev03030
DNA replication
mhev03410
Base excision repair
mhev03420
Nucleotide excision repair
mhev03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mhev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MHEL_42080 (ligA)
03410 Base excision repair
MHEL_42080 (ligA)
03420 Nucleotide excision repair
MHEL_42080 (ligA)
03430 Mismatch repair
MHEL_42080 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mhev03032
]
MHEL_42080 (ligA)
03400 DNA repair and recombination proteins [BR:
mhev03400
]
MHEL_42080 (ligA)
Enzymes [BR:
mhev01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MHEL_42080 (ligA)
DNA replication proteins [BR:
mhev03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MHEL_42080 (ligA)
DNA repair and recombination proteins [BR:
mhev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MHEL_42080 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MHEL_42080 (ligA)
MMR (mismatch excision repair)
DNA ligase
MHEL_42080 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MHEL_42080 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Auto_anti-p27
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
BBY65965
UniProt:
A0A7I7TC79
LinkDB
All DBs
Position
4477225..4479333
Genome browser
AA seq
702 aa
AA seq
DB search
MASETSDPEVDPIDPDVRRRWQDLAEEVREHQFRYYIKDAPIVSDADFDALFNELLALED
RYPELRVADSPTQLVGGAGFTTDFSAAAHLERMLSLDDVFNTEELAAWSNRVETEIGRDP
QYLCELKVDGVAIALVYRNGRLERAATRGDGRVGEDVTNNARTIDDIPENLTESTEYPVP
AVLEVRGEVFFRLADFENLNASLVEEGKDPFANPRNSAAGSLRQKNPAVTARRRLRMICH
GLGHTEGFTPATLHDTYFALKAWGLPVSDHTTQVAGLAAVEEKIRYWGERRHEIEHEIDG
IVVKVDDFALQRRLGATSRTPRWAVAYKYPPEEAQTTLLDIKVNVGRTGRVTPFAVMTPV
KIAGSTVGMATLHNGSEVKRKGVLIGDTVMIRKAGDVIPEVLGPVVDLRDGTERAFHMPT
HCPECGTPLAPAKEGDVDIRCPNARSCPAQLRERVFHLAGRGGLDIEGLGYEAATALLAA
KVIGDEGDLFNLTSADLLTSEFFTTKDGALSANGARFLINLQQAKDRPLWRILVSLSIRH
VGPTAARALAVAFGSLEAIMAASEEQLADVEGVGPTIAAALVEWFAVDWHRAIIDKWKAA
GVRMEDVRDAAITPTLQGLSIVVTGSLPGFSRDEAKEAIITRGGKAVGSVSKKTSFVVAG
DAPGSKYDKAVELGVPILDEDGFRALLASGPPPQEHEAGEVT
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtggcttcagagacatccgatcccgaggttgaccccatcgatccggatgtgcgccggcgc
tggcaggaccttgccgaagaggtgcgtgagcatcagttccggtactacatcaaggacgcg
ccgatcgtctccgatgcggacttcgacgcgctcttcaacgaactgctcgccctcgaggac
cgctaccccgagctgagggtcgccgactcgccgactcagctggtcgggggcgccggattc
acgaccgacttctccgcggccgcccacctggagcggatgctgtccctggacgatgtgttc
aacaccgaagagctggcggcctggtccaaccgggtggagactgagatcggccgcgacccg
cagtacctgtgcgagctcaaggtcgacggtgtcgccatcgccctggtgtaccgcaacggg
cggctggaacgcgcggccacccgcggtgacggccgggtcggcgaggacgtcaccaacaac
gcccggaccatcgatgacatccccgaaaacctcactgaatcaacggaatacccggtaccg
gcagttctcgaggtgcgcggtgaggtcttcttccggctcgccgacttcgagaacctcaac
gccagcctcgtcgaggagggcaaggatccgttcgccaatccacgcaacagtgcggccggc
tcgctgcggcagaagaatcctgcggtcaccgcgcggcgccggctgcggatgatctgtcac
ggcctgggccacaccgagggcttcacaccggccacgctgcacgacacctacttcgcgctg
aaggcctgggggctgccggtctccgaccacaccacgcaggtcgccggactggccgccgtc
gaggaaaagatcaggtactggggtgagcggcgccacgagatcgagcacgagatcgacgga
atcgtggtcaaagtcgacgacttcgcgctgcaacgccgcctcggcgccacgtcgcgcacc
cccaggtgggcggtcgcctacaagtacccgccggaagaggcccagaccacgctgctcgac
atcaaggtcaacgtggggcgcaccggccgggtcaccccgttcgctgtcatgacgccggtg
aagatcgccgggtccaccgtcgggatggccaccctgcacaacggctcggaggtcaagcgc
aagggcgtgctgatcggcgacaccgtgatgatccgcaaggccggcgacgtcatccccgag
gtgttgggacccgtcgtcgatctgcgcgacggcaccgagcgcgcattccacatgcccacc
cactgcccggaatgcggtaccccgctggccccggccaaggagggtgacgtcgacattcgc
tgcccgaatgcgcggtcatgtccggcgcagctgcgcgagcgggtcttccatctggccggc
cgcggcgggctggacatcgaggggctcggctatgaggcagcgaccgcgctgctggccgcc
aaggtcatcggcgacgagggtgatctgttcaacctcaccagcgctgacttgctgacgtcg
gagttcttcacgaccaaagatggtgcgctgtcggccaatggcgcgcgattcctgatcaac
ctgcagcaggccaaggaccggccgctgtggcggattctggtgtcgctgtcgattcggcat
gtggggccgacggcggcgcgggccttggccgtcgccttcggcagccttgaggccatcatg
gcggcatccgaggagcagctggccgatgtcgagggtgtcggcccgaccatcgcggccgcg
ctcgtcgagtggttcgccgtcgactggcaccgcgcgatcatcgacaagtggaaggcggcc
ggcgtgcggatggaagacgttcgtgacgccgcgataactcctacactgcaaggactttcg
atcgtggtcaccgggtcgctgcccggcttctcccgggatgaggccaaggaagccatcatc
acccgcggtggcaaggccgtcggctcggtgtcgaagaagacgtcgttcgtggtggccggc
gatgcgcccgggtcgaagtacgacaaggccgtcgagctgggtgtcccgatcctcgatgag
gacggtttccgtgccctgctcgcgagtggcccgccgccgcaggagcacgaggccggggaa
gtgacctag
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