Methylocystis heyeri: H2LOC_006055
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Entry
H2LOC_006055 CDS
T06290
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mhey
Methylocystis heyeri
Pathway
mhey03030
DNA replication
mhey03410
Base excision repair
mhey03420
Nucleotide excision repair
mhey03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mhey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H2LOC_006055 (ligA)
03410 Base excision repair
H2LOC_006055 (ligA)
03420 Nucleotide excision repair
H2LOC_006055 (ligA)
03430 Mismatch repair
H2LOC_006055 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mhey03032
]
H2LOC_006055 (ligA)
03400 DNA repair and recombination proteins [BR:
mhey03400
]
H2LOC_006055 (ligA)
Enzymes [BR:
mhey01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H2LOC_006055 (ligA)
DNA replication proteins [BR:
mhey03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H2LOC_006055 (ligA)
DNA repair and recombination proteins [BR:
mhey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H2LOC_006055 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H2LOC_006055 (ligA)
MMR (mismatch excision repair)
DNA ligase
H2LOC_006055 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H2LOC_006055 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
HALZ
Zn_Ribbon_TF
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QGM45291
UniProt:
A0A6B8KE59
LinkDB
All DBs
Position
complement(1350800..1352917)
Genome browser
AA seq
705 aa
AA seq
DB search
MPPRSPKSSQPIEGLTPDEARAEHLRLAAEIAEHDRHYYQEDAPAVSDAEYDALRRRYDA
LEAAFPELATPESLSRKIGAAPAEKFAKVKHVVPMLSLGNVFSDEEVREFVARVRRFLGL
SEDAPLAFTAEPKIDGLSCSLRYEHGRLVSAATRGDGFEGEDVTANIRTIDQIPAELRGG
FGPVLDVRGEVYMTHRDFAALNERQAAAQKQKFANPRNAAAGSLRQLDPAVTAGRPLRFF
AYAWGEASELPAKTQKGVIEAFSHLGFPVNPLTRICANVEEMLEHYRAIEAQRATLGYDI
DGVVYKVDDIALQARLGFVSRAPRWAVAHKFPAEQATTILRGIEINVGRTGALTPVARLE
PVTVGGVVVSNATLHNEDEIERKDVRVGDTVVVQRAGDVIPQIVEVRLDKRPPDAKPYEF
PHVCPVCGSAALREIDEKTGEADVVRRCTGSLVCAAQAVERLKHFASRNAMDIEGLGDKQ
IEYFYQEGLIKTASDIFTLQARDEAGLSRLKNREGFGETSVRNLFAAIDARRRVPINKFI
YALGVRHVGETNAKRLARHFPDFQQLRAAASAAEPGGEAFAAFDEIDGLGPVVAEALHDF
FAEPHNEREIDALLEHVTLEPMPAVESSSPVAGKTVVFTGSLERLTRDEAKAQAERFGAK
ISGSVSKKTDLVVAGPGAGSKLTKAKELGVEVISEDEWFALTGQG
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgcgctccccgaaatcgtcgcaaccgatagagggcctcacgcccgatgaagcg
cgcgcagagcacctgaggctcgccgcggaaatagccgagcacgaccgccactattatcaa
gaggacgcgcccgccgtttcggacgcggaatatgacgcgttgcggcgacgctacgacgcg
ctcgaagcggcctttcccgagcttgcaactcccgagtcgctgtcccggaagatcggcgcc
gcgccggcggaaaaattcgccaaggtcaagcatgtcgtgcccatgctttcgcttggcaac
gtcttctcagacgaggaggtgcgggagttcgtcgcccgcgtccgtcgtttcctcggtctc
tccgaggacgcgccgctcgcttttacggcggagcccaagatcgacggcctttcctgctcg
ctgcgatacgaacacggccgcctcgtcagcgcggccacgcgcggcgatggtttcgagggc
gaagacgtcaccgccaatattcgcacgatcgaccagattccggccgagctgcgcggcggt
tttggtcccgtgctggacgtgcgcggcgaagtttatatgactcatcgcgatttcgccgcg
ctcaatgaaagacaggccgcggcgcagaaacagaaattcgccaatccccgcaacgccgcc
gccggctccctgcgccagctcgatccggccgtgacggcgggccggccgctgcgctttttc
gcctatgcctggggcgaggccagcgagctgccggccaagacccagaaaggcgtcatcgag
gcgttttcgcacctcggctttccggtcaatcccttgacccggatctgcgccaatgtcgaa
gaaatgctggagcattaccgcgccatcgaggcgcagcgcgcgacgctcggctacgacatc
gacggcgtggtctataaggtcgacgacatcgcccttcaggcgcgtctgggtttcgtctcg
cgcgcgccgcgctgggcggtggcgcataaattcccggccgaacaggcgacgacgatcctg
cgcggcatagagatcaatgtcggccgcaccggcgccctcacgccagtggcgcggctcgag
cccgtcaccgtcggcggcgtggtggtctccaacgccactttgcataatgaggacgagatc
gagcgcaaggacgtgcgcgtcggcgatacggttgtcgtgcagcgcgccggcgacgtcatt
ccccagatcgtcgaggtccggctggacaaacggccgcctgatgcgaagccatatgaattt
ccgcatgtttgcccggtatgcggctcggcggccctgcgggaaatcgacgaaaaaaccggc
gaggccgatgtcgtcaggcgctgcacgggttcgctggtctgcgcggcgcaggcggtggag
cggctcaaacatttcgcctcgcgcaacgccatggacatagaaggcctcggcgacaagcag
atcgagtatttttaccaggaaggcctgatcaagaccgcctcggatatttttacgcttcaa
gcgcgcgacgaagccgggctgtcgcggcttaaaaaccgcgagggcttcggagaaacttcg
gtcaggaatcttttcgcggctatcgacgcgcgcaggcgcgtgccgatcaacaagttcatc
tatgcgctcggcgtcaggcatgtcggcgaaaccaacgccaagcggctggcgcggcatttt
cccgactttcagcagcttcgcgccgcagcgagcgcggccgaacccggcggcgaggctttc
gccgccttcgacgagatcgacgggctcggtcccgtcgtggccgaggcgctgcatgacttt
ttcgccgaaccgcacaatgagcgggaaatcgacgcgctgctcgaacatgtgacgctggag
ccgatgccggcggtcgaatcctcttctccggtcgcgggcaagacggtggtcttcaccggg
tcgctggagcggctcacccgtgatgaggccaaggctcaggccgagcgtttcggcgccaaa
atatcggggtcggtttcgaagaagaccgatctcgtcgtggcgggaccgggcgcgggctca
aagctcaccaaagccaaagagctgggcgtcgaggtgatatccgaagacgagtggttcgcc
ctgaccgggcaggggtga
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