Mesomycoplasma hyorhinis GDL-1: MYM_0113
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Entry
MYM_0113 CDS
T01730
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mhh
Mesomycoplasma hyorhinis GDL-1
Pathway
mhh03030
DNA replication
mhh03410
Base excision repair
mhh03420
Nucleotide excision repair
mhh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mhh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MYM_0113 (ligA)
03410 Base excision repair
MYM_0113 (ligA)
03420 Nucleotide excision repair
MYM_0113 (ligA)
03430 Mismatch repair
MYM_0113 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mhh03032
]
MYM_0113 (ligA)
03400 DNA repair and recombination proteins [BR:
mhh03400
]
MYM_0113 (ligA)
Enzymes [BR:
mhh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MYM_0113 (ligA)
DNA replication proteins [BR:
mhh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MYM_0113 (ligA)
DNA repair and recombination proteins [BR:
mhh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MYM_0113 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MYM_0113 (ligA)
MMR (mismatch excision repair)
DNA ligase
MYM_0113 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MYM_0113 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
BRCT_2
DNA_ligase_ZBD
PTCB-BRCT
TraI_2B
Nlig-Ia
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AEX13915
LinkDB
All DBs
Position
130457..132478
Genome browser
AA seq
673 aa
AA seq
DB search
MNIDQKDYKNEEKQAKKQIEELRQKLHLWNHHYFDLDIPIVDDLVYDQELNKLKKLEKKY
FYLFTLEENNASPTQIVGAKVDERFQKIKHSQPMLSLNKAYSLEELEKFAQKTIKIDENA
SFYVEPKIDGISISLHYKQGKFTQAVTRGDGTTGEDVSHNIENIDAKYVPKSINYFDDIE
IRGEVFLDLESFKNMNLEQARLEKPLFLNPRNAAAGQLRRLDSKSNKLANLKVFVYQVVN
PELHNLATVEESIQFLQTLGFNTNNLGQHKANIHQSYQLIEEIQEKENKLNYEIDGVVIK
VNEFKLYDELGTTSKFPHSAIAFKFSDKVVQTKLKHIFATVGRTGKITYNAVLEPVLLQG
STISAATLHNYNYIKDLAINTNSMVYIKKAGEIIPQVIQSVEKFEKTNFEKITNCPECNS
DLIDSETGIDQFCINPNCLGIQLRKIIHFCSKEGLDIKDLGEKKIELFWDQNLIRSIPDI
FRLATKIEEISKLKSFQQKSILKLINAIEKAKHTTLDKLIFALGIKHIGQKTAKMLAQKV
DNLEQLKTFNFDTFLEDKDIGEKTVESLKNYFKNEANLQIINELIQVNFEIIKEETYSNI
LENLSFVITGTLSRSRSQIESIILQNKGKVSSSVSKNTSYLILGENGGSKEDKARNLGVK
ILSEEEFFKLLIN
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcgaccaaaaagactataaaaatgaagaaaaacaagcaaaaaaacaaattgaa
gaacttcgtcaaaaacttcatttatgaaatcatcattattttgatttagatattcctatt
gttgatgatttagtctatgatcaagaactaaataaattaaaaaaattagaaaaaaaatat
ttttacttatttactttagaagaaaacaatgcttctcccacacagattgtaggagctaaa
gtagatgaaagatttcaaaaaatcaaacattcacaacctatgttgtctttaaataaagca
tatagtttagaagaactagaaaagtttgctcaaaaaactataaaaatagatgaaaatgct
tcattttatgtagaacctaaaattgatggcatttcaatttcgcttcactataaacaaggt
aaatttacccaagcagttactagaggcgatggaactacaggtgaagatgtaagtcataat
attgaaaacattgatgcaaaatatgttccaaaatctattaattattttgatgatatagaa
attcgtggtgaagtttttcttgatttagaaagctttaaaaatatgaatttagaacaagca
aggcttgagaaaccattgtttttaaatccaagaaatgcagctgcaggtcaacttagaaga
ttagattctaaaagtaacaaactagcaaatctaaaagtttttgtttatcaagtagtaaac
ccagaattgcataatttagcaactgttgaagaaagtatacagtttttacaaacccttggt
tttaatacaaataatttaggacaacataaagcaaatattcaccaaagctatcaattaatt
gaagaaattcaagaaaaagaaaacaaattaaattatgaaattgatggtgtagttattaaa
gtaaatgaatttaaactttatgatgaattaggaactacttcaaaattccctcacagtgct
attgcttttaaattttcagacaaagttgttcaaactaaattaaaacatatttttgcaaca
gttggaagaacaggaaaaataacttacaatgctgttttagaacctgttttacttcaaggt
tctactatttctgcagcaactttacataattataattacattaaagatttagctataaat
actaactcaatggtttatatcaaaaaagctggagaaattatccctcaggttattcaatca
gtagaaaaatttgaaaaaactaattttgaaaaaataacaaattgccctgaatgtaattcc
gatttaatagatagcgaaacaggaattgatcagttttgtattaatcccaattgtctcggt
attcagttaagaaaaattattcatttttgttcaaaagaaggtttagatattaaagattta
ggagagaaaaaaattgaacttttttgagaccaaaatttaattagatctatacctgatatt
tttaggctagctaccaaaattgaagaaatttctaagctaaaatctttccaacaaaaatct
attttaaagctaataaatgcaatagaaaaagctaaacatactactttagataaattaatt
tttgctttaggaatcaaacacatcggacaaaaaacagcaaaaatgttagctcagaaagta
gataatttagaacagttaaaaacctttaattttgatacttttttagaagataaagatata
ggcgaaaaaacagttgaaagtttgaaaaattacttcaaaaatgaagcaaatttacaaatt
attaatgaattaatccaagtaaattttgaaataataaaagaagaaacttactctaacatt
ttagaaaatttatcatttgtaattacaggaactttatctagatcaagaagccaaattgaa
tcaattatccttcaaaataaaggaaaagtttcgtcatcagtgtccaaaaatacttcgtat
ttaattttaggcgaaaatggtggctctaaagaagataaagcacgtaaccttggtgttaaa
atcctttcagaagaagaatttttcaaacttttaatcaattaa
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