Mycolicibacterium holsaticum: K3U96_17340
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Entry
K3U96_17340 CDS
T07607
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mhol
Mycolicibacterium holsaticum
Pathway
mhol03030
DNA replication
mhol03410
Base excision repair
mhol03420
Nucleotide excision repair
mhol03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mhol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K3U96_17340 (ligA)
03410 Base excision repair
K3U96_17340 (ligA)
03420 Nucleotide excision repair
K3U96_17340 (ligA)
03430 Mismatch repair
K3U96_17340 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mhol03032
]
K3U96_17340 (ligA)
03400 DNA repair and recombination proteins [BR:
mhol03400
]
K3U96_17340 (ligA)
Enzymes [BR:
mhol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K3U96_17340 (ligA)
DNA replication proteins [BR:
mhol03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K3U96_17340 (ligA)
DNA repair and recombination proteins [BR:
mhol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K3U96_17340 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K3U96_17340 (ligA)
MMR (mismatch excision repair)
DNA ligase
K3U96_17340 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K3U96_17340 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
IGPS
Motif
Other DBs
NCBI-ProteinID:
QZA11009
LinkDB
All DBs
Position
complement(3566128..3568230)
Genome browser
AA seq
700 aa
AA seq
DB search
MSPKATPDPETTLAEQAEDAPDADVRRRWQELADEVREHQFRYYVRDAPIITDADFDKLL
RELEALEDEHPELRTPDSPTQLVGGAGFATDFTPAEHLERMLSLDNVFTPEELAGWAARI
KDEIGKDAHFLCELKIDGVALSLVYRDGRLERAATRGDGRTGEDVTLNARTIRNVPQKLT
GTKEFPLPKVLEVRGEVFFRVTDFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTAR
RKLQMICHGVGHAEGFRPESLHAAYLALNAWGLPVSDHTSRVQGMAAVTERIAYWGEHRH
EVEHEIDGVVVKVDEVALQRRLGSTSRAPRWAVAYKYPPEEAQTKLLDIKVNVGRTGRVT
PYAEMEPVKIAGSTVSQATLHNASEVKRKGVLIGDTVMIRKAGDVIPEVLGPVVDLRDGS
EREFVMPTTCPECGTTLAPAKEGDADIRCPNTRSCPAQLRERVFHLAGRGALDIEGLGYE
AAVALLTSGVITDEGDLFTIGSDDLLRTELFRTKDGALSANGKRLLVNLHDAKTRPLWRI
LVALSIRHVGPTAARALATEFGSLEAIMSASEERLAGVEGVGPTIAAAVTEWFTVDWHRA
IVDKWRAAGVRMADERDESIERNLEGLSIVVTGSLAGFSRDDAKEAIVARGGKAAGSVSK
KTAYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLENGPD
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
gtgagcccgaaggcaacgccggatcccgagacgacgctggccgaacaggccgaggacgcg
cccgatgccgatgtgcggcgccgctggcaggagctggccgacgaggtgcgcgagcaccag
ttccggtactacgtgcgcgacgcgccgatcatcaccgacgccgacttcgacaagctgctg
cgggaactggaggccctcgaggacgagcatcccgagctgcgaacccccgactcgcctacg
caactggtcggcggcgccggcttcgcgaccgacttcaccccggccgaacacctcgagcgg
atgctcagcctggacaacgtgttcacccctgaagagctggccgggtgggccgcgcgcatc
aaagacgagatcggaaaagacgcgcactttctgtgcgagctgaagatcgacggggtggcg
ctgtcgctggtgtaccgcgacgggcggctggaacgtgcggcgacccgcggtgacggacgc
accggcgaagacgtcacgctcaatgcccgcaccatccgcaacgttccccaaaagctcacc
ggtaccaaggaattcccgctgccgaaggtgctcgaggtacgcggtgaggtgttcttccgg
gtcaccgatttcgaagagctcaacgccgggctggtcgccgagggtaagccgccgttcgcc
aacccccgcaacagcgcggcaggatcgcttcggcagaagaacccggccgtcaccgcgcgt
cgcaaactgcagatgatctgccacggcgtcggccacgccgagggcttccgcccggaatcg
ctgcacgcggcgtatctcgcgctgaacgcatgggggctaccggtttccgatcacacctcc
cgggtgcaggggatggcggccgtcaccgaacgcatcgcgtactggggagaacaccgccac
gaggtcgagcacgaaatcgacggcgtggtagtcaaagtcgacgaggtcgcgttgcagcgc
cggctcggatcgacgtcgcgggcaccgcgctgggcggtggcctacaagtacccacccgag
gaagcccagaccaagctgctcgacatcaaggtcaacgtgggccggaccggtcgggtgacg
ccgtacgccgagatggagccggtcaagatcgccggttcgacggtcagtcaggccacgctg
cacaacgcctcggaggtcaagcgcaagggtgtgctgatcggcgacaccgtgatgatccgc
aaggccggtgacgtgatcccggaggtgctgggacccgttgtcgatctgcgcgacggctcc
gagcgcgaattcgtcatgcccacaacgtgtccggagtgcggcaccacgctggcgccggcc
aaggagggcgacgccgacatccgctgccccaacacgcggtcctgtccggcgcagctgcgc
gagcgggtgttccacctcgcaggccgcggcgcgctggacatcgaggggctgggttacgaa
gcggccgtcgcgctgctgaccagcggtgtgatcaccgacgaaggcgacctgttcacgatc
ggcagcgacgacctgttgcgcaccgagcttttccggaccaaggacggcgccttgtcggct
aacggtaagcggctgctggtgaacctgcacgacgccaaaacccgtccgctgtggcggatc
ctggtggcgctgtccattcggcatgtgggcccgaccgcggcgcgcgcgctggccaccgag
ttcggcagcctggaggcgatcatgtcggcctccgaggagcggctggccggggtcgagggt
gtcggtccgaccatcgccgcggcggtcaccgaatggttcaccgtcgactggcaccgcgcg
atcgtcgacaagtggcgcgcggcgggggtgcgcatggccgacgaacgcgacgaaagcatc
gaacgcaacctcgaagggctctcgatcgtcgtcaccgggtcgctggccggcttctcccgc
gacgacgccaaggaagcgatcgtcgcgcgcggcggcaaggccgccggatcggtgtcgaag
aagaccgcctacgtggtggccggtgactcgccgggctccaagtacgacaaggcggtcgag
ctcggggtgccgatcctcgacgaggacggcttccggcggctgctggaaaacggccccgac
tga
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