Microbacterium horticulturae: PU630_06875
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Entry
PU630_06875 CDS
T10341
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mhot Microbacterium horticulturae
Pathway
mhot03030
DNA replication
mhot03410
Base excision repair
mhot03420
Nucleotide excision repair
mhot03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mhot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PU630_06875 (ligA)
03410 Base excision repair
PU630_06875 (ligA)
03420 Nucleotide excision repair
PU630_06875 (ligA)
03430 Mismatch repair
PU630_06875 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mhot03032
]
PU630_06875 (ligA)
03400 DNA repair and recombination proteins [BR:
mhot03400
]
PU630_06875 (ligA)
Enzymes [BR:
mhot01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PU630_06875 (ligA)
DNA replication proteins [BR:
mhot03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PU630_06875 (ligA)
DNA repair and recombination proteins [BR:
mhot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PU630_06875 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PU630_06875 (ligA)
MMR (mismatch excision repair)
DNA ligase
PU630_06875 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PU630_06875 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
DUF4796_N
Zn_ribbon_NUD
Zn_Ribbon_1
Motif
Other DBs
NCBI-ProteinID:
WEG10271
LinkDB
All DBs
Position
1462751..1465051
Genome browser
AA seq
766 aa
AA seq
DB search
MADEQLTLDQARAEANDLTERILTARDDYYGRNAEVVDDATYDGWMRRLEEIERWYPELQ
GQDSPTLTVGAAENTPFAPVEHAERMLSLDNVFSPDELRDWCVKAEASAGRTVRWLTELK
IDGLAISLRYEHGRLTSAATRGDGRVGEDITMNAVRVHGIPDRLAGTGHPALVEVRGEVY
IPVAAFEELNEFQAELRERVVADARERPRFDEEKARTSAQRRFPAFANPRNAASGGLRQQ
LDKKDGLELESGTRRLDSLRLLVHGIGAWPNPPVSSQSEVYELLADWGLPTSPYYRTPDT
IDGVLEYVAYYGEHRHDVEHELDGIVVKVDELALHDELGATSRAPRWAIAYKYPPEQVNT
KLLDIVVSVGRTGRATPYAVMEPARVAGSVVRQATLHNQDVVKAKGVLIGDTVVLRKAGD
VIPEVLGPVVELRDGSERAFVMPEFCPECGSPLRPAKEGDIDLRCPNARSCPAQVRGRVE
HIGSRGALDIEVLGEVTAAALTQAEPPAEAPLDTEAGLFELTLDELVPISVIVRDAETGL
PKETDGVVKTRRPFRRNPTADERKAGLEGPQPSASAIKLLDELEKAKTKDLWRLLVALNI
RHVGPVAARALAQWFGSLDAIRAASREDLAAVEGVGGIIADSLMDWFGVDWHVDIVSRWT
DAGVQWAIPGHAGPGAVTAGGVLEGVTVVATGSLEGYSREGAQEAIIAAGGKAASSVSKK
TDFVAAGPGAGSKLTKAEELGVRILDAAQFKILVEQGPDALDSADA
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
gtggcagacgagcagctgaccctcgaccaggcgcgtgctgaggcgaacgacctcaccgag
cgcatcctgactgcgcgcgacgactactacggccgcaacgccgaggtcgtcgacgacgcg
acgtacgacgggtggatgcggcggctcgaagagatcgagcggtggtaccccgagctgcag
ggacaggactcgcccacgctcaccgtcggcgccgctgagaacacgccgtttgctcctgtc
gagcacgccgagcgcatgctgagcctcgacaacgtgttctcgcccgacgaactgcgtgac
tggtgcgtgaaggccgaggcgagcgcagggcgcacagtgcgctggctcaccgagctgaag
atcgacggactcgccatcagcctgcgttacgagcacggccggctcacttcggccgcgacg
cgcggtgacggccgtgtcggcgaagacatcaccatgaacgcggtgcgggtgcacggcatc
cccgacagactcgccggcacggggcatcccgccctcgtcgaggtgcgcggcgaggtgtac
atcccggtagcggcgttcgaagagctcaacgagttccaggcggagttgcgcgagcgcgtc
gtggccgatgcacgggagcggccgcggttcgatgaagaaaaggcgcgcacgagcgcgcag
cgacggtttccggccttcgcgaacccgcgcaacgccgccagcggcgggctgcggcagcag
ctcgacaagaaagacggcctcgagctcgagtcgggcacgcgacggctcgactccctgcgc
cttctcgtgcacgggatcggcgcctggccgaatccgcccgtctcgtcgcagagcgaggtg
tatgagctgctggcggactggggactgccgacgagcccgtactatcgcacgcctgacacc
atcgacggcgtgctcgagtacgtcgcgtactacggcgagcaccgacacgatgtcgagcac
gagctcgacggcatcgtcgtcaaggtcgacgagctcgcgctgcacgacgagctgggcgcc
accagtcgtgcaccgcgctgggcgatcgcctacaagtacccgcccgagcaggtgaacacg
aagcttctcgacatcgtggtctcggtcggacgtacggggcgggcgacgccgtatgcggtg
atggagccggcgcgggtcgcgggttcggtcgtgcgccaggcgactctgcacaaccaggac
gtcgtgaaggccaagggcgtgctcatcggcgacaccgtggtgctgcgcaaggcgggcgac
gtgatccccgaggtgctcgggcccgtcgtcgagctgcgcgacggcagcgagcgcgcgttt
gtgatgccggagttctgccccgaatgcgggtcgccactgcgcccggccaaggagggcgac
atcgacctgcggtgcccgaatgcacggtcgtgcccggcgcaggtgcgcggacgggtcgag
cacatcggttcgcgcggagcgctcgacatcgaggtgctcggcgaggtcaccgccgccgca
ctcacgcaggccgagccgccggcggaggcgccgctcgacactgaggccgggctgttcgag
ctcacgctcgacgagctcgtgccgatctcggtgatcgtgcgcgatgccgagacggggctg
cccaaagagacggatggcgtggtcaagacgcggcgtccgttccgtcgcaaccccacggcc
gatgagcgcaaggcggggctcgagggaccccagccgtcggcctcggccatcaagctgctc
gacgagctcgagaaggccaagacgaaggatctctggcgactgctggtggcgctgaacatc
cggcacgtggggccggtggcggcacgggcgctcgcgcagtggttcgggtcgttggacgcg
attcgggcagcctcgcgtgaagaccttgcggcggtcgagggggtcggcggcatcatcgcc
gactcactcatggactggttcggggtcgactggcacgtggacatcgtgtcgcggtggacg
gacgccggcgtgcagtgggcgattcccgggcatgccgggccgggcgccgtgacggctggg
ggagtgctcgaaggcgtcacggtcgtggcgaccgggtcgctcgagggctacagccgcgag
ggcgcgcaggaggccatcatcgccgcgggcggcaaggccgcgtcatccgtctccaagaag
accgacttcgtggcggcgggaccgggcgcgggctcgaagctcacgaaggccgaagagctc
ggcgtgcgcatcctcgacgcggcgcagttcaagatcctcgtcgagcaggggcccgacgcg
ctggactcggcggatgcctga
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