Mesorhizobium huakuii: MCHK_3166
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Entry
MCHK_3166 CDS
T06432
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mhua
Mesorhizobium huakuii
Pathway
mhua03030
DNA replication
mhua03410
Base excision repair
mhua03420
Nucleotide excision repair
mhua03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mhua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MCHK_3166 (ligA)
03410 Base excision repair
MCHK_3166 (ligA)
03420 Nucleotide excision repair
MCHK_3166 (ligA)
03430 Mismatch repair
MCHK_3166 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mhua03032
]
MCHK_3166 (ligA)
03400 DNA repair and recombination proteins [BR:
mhua03400
]
MCHK_3166 (ligA)
Enzymes [BR:
mhua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MCHK_3166 (ligA)
DNA replication proteins [BR:
mhua03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MCHK_3166 (ligA)
DNA repair and recombination proteins [BR:
mhua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MCHK_3166 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MCHK_3166 (ligA)
MMR (mismatch excision repair)
DNA ligase
MCHK_3166 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MCHK_3166 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DUF4796_N
Zn_ribbon_PaaD
RUBY_RBDX
FdhE_central
Motif
Other DBs
NCBI-ProteinID:
AID30973
LinkDB
All DBs
Position
3279619..3281823
Genome browser
AA seq
734 aa
AA seq
DB search
MAEKPVDSLSESEAEAELKRLAEEIAEHDRRYHTEDAPTISDAAYDALTRRNLAIEQRFP
DLVREDSPSRRVGAPPAEGFAKVRHAVPMLSLAKAYTDEDVTDFIERGRRFFDRDKDLDI
AFTAEPKIDGLSASLRYENGVFVQGATRGDGTVGEDITANLRTIADIPAKLKGSGWPDVI
EIRGEVYMTYAEFEALKARSAAAGGQDYVNPRNTAAGSLRQKDASVTASRNLKFFAYAWG
FTTADPAPTQYESVQKFADWGFKISPLMVRAKSVEELVAHYHLIEEQRSSLGYDIDGVVY
KVDQLELQRRWGFVTGEPRWAVAHKFPAEQAMTTVQRIDIQVGRTGTLAPVARLAPVTVG
GVVVENVTLHNEDYIKGFDSNGLPIREGIDVRIGDTVVIQRAGDVIPQIVSVVIDKRPAD
TVPYEFPHTCPVCGSPATREINEKTGKEDSRRRCTGELICAAQAVERLRHFVSRGALDIE
GLGAENIDTFFNAGLIKTAADIFTLRDRRPAVTKALAERREEQARQREAASGKTRKNVRS
VEDRNYEGLDKLFAAIDSRREPELDRFIFALGIRHIGETTAAVLAKTFSTIEELIRVGKE
TAAAEDPHTVFPSVNGIGDTVIDALRDFFGNERNDDVLDKLLEQVRPKPYIVTVSADSEV
AGKTIVFTGTLEKMTRSEAKAMAERLGAKVAGSVSAKTDLLVAGPGAGSKLKLASELGVE
VIDEDTWLQRVGKA
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaaaacctgtcgattcgctcagcgaaagcgaggctgaagccgagctgaagcgc
ctggcggaggagatcgccgagcacgatcggcgctaccataccgaggacgcgccgacaatc
tcggacgccgcctatgatgcgctgacgcggcgcaaccttgccatcgagcagcgttttccc
gacctggtgcgcgaggattcgccatcacgcagggtcggcgcgccgccggccgagggtttc
gccaaggtgcgccatgccgtgccgatgctcagcctcgccaaggcctatacagacgaggat
gtcactgatttcatcgagcgcggccggcgcttcttcgaccgcgacaaggacctcgacata
gccttcaccgccgaaccgaagatcgacggcctgtcggcctcgttgcgctatgagaatggc
gtgttcgtgcagggcgcgacgcgcggcgacggaaccgtgggtgaggacatcaccgccaat
ctcaggaccatcgccgatattcccgcgaagctgaaaggctcgggctggcctgatgtcatc
gagatacgcggcgaggtctacatgacctatgcggaattcgaggcgctgaaggcgcgctcg
gccgcggccggcggccaggattacgtcaatccgcgcaacacggctgccggatcgctgcgc
cagaaggatgcctctgtcaccgccagccgcaatctcaagttttttgcctatgcctggggc
ttcacgaccgcggatccggcgccgacccagtatgaatcggtgcaaaaattcgccgactgg
gggttcaagatcagccctttgatggtgcgggcgaagtcggtcgaggaactggtcgcacat
taccatctgatcgaggagcagcgctcctcgctcggctatgacattgatggtgtcgtctac
aaggtcgaccagctggagctgcagcgccgctggggtttcgtcaccggcgagccgcgctgg
gcggttgcccacaaattcccggccgagcaggcgatgacgaccgtgcagaggatcgacatc
caggtcggccgcaccggcacgctggcgccggtcgcaaggcttgcgcccgtcaccgtcggc
ggcgtcgtggtcgaaaacgtcacgctgcacaatgaggattacatcaagggtttcgacagc
aacggcctgccgatccgcgaaggcatcgacgtgcgcatcggcgacacggtggtgatccag
cgggcgggcgacgtcattccgcagatcgtcagcgtcgtcatcgacaagcgcccggccgat
accgtgccttacgaattcccgcatacctgtccggtctgcggctcgccggcgacgcgcgag
atcaacgagaagaccggcaaggaagattctcgccggcgctgcaccggcgaactgatctgc
gccgcgcaagccgtggaaagattacgccatttcgtctcgcgcggggcgctcgatatagag
gggctgggcgccgaaaacatcgacaccttcttcaatgctgggctgatcaagaccgccgcc
gatatttttacgctcagggaccgccgtcccgcggtcaccaaggcactggccgagcggcgc
gaggagcaggccaggcagcgcgaggcggcgtccggcaagacgcgcaagaatgtgcgcagc
gtcgaggaccgcaactatgagggcctcgacaagctgttcgcggccatcgattcgcgccgc
gaaccggaactcgaccgcttcatcttcgcgctcggcatccgccatatcggcgagacgacg
gccgccgtgctcgccaagaccttttccaccatcgaggaactgatccgtgtcggcaaggaa
acggcggcagcggaggacccgcacaccgtattcccatcggtcaacggcatcggtgacacg
gtgatcgatgcgctgcgcgatttcttcggcaatgaacgcaatgacgacgtgctcgacaag
ctgctcgaacaggtcaggcccaagccctatatcgtcaccgtctcggccgacagcgaggtc
gcgggcaagaccatcgtcttcaccggcacgctggagaagatgacccgctcggaagccaag
gcgatggccgagcggctcggcgccaaggtcgccggctcggtttcggccaagaccgatctg
ctggtggccggacccggggccggctccaagctcaagcttgccagcgaactcggcgtcgag
gtgatcgacgaggacacctggctgcaacgggtcggcaaggcgtga
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