Neomoorella humiferrea: MHLNE_20650
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Entry
MHLNE_20650 CDS
T10454
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mhui Neomoorella humiferrea
Pathway
mhui03030
DNA replication
mhui03410
Base excision repair
mhui03420
Nucleotide excision repair
mhui03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mhui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MHLNE_20650 (ligA)
03410 Base excision repair
MHLNE_20650 (ligA)
03420 Nucleotide excision repair
MHLNE_20650 (ligA)
03430 Mismatch repair
MHLNE_20650 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mhui03032
]
MHLNE_20650 (ligA)
03400 DNA repair and recombination proteins [BR:
mhui03400
]
MHLNE_20650 (ligA)
Enzymes [BR:
mhui01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MHLNE_20650 (ligA)
DNA replication proteins [BR:
mhui03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MHLNE_20650 (ligA)
DNA repair and recombination proteins [BR:
mhui03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MHLNE_20650 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MHLNE_20650 (ligA)
MMR (mismatch excision repair)
DNA ligase
MHLNE_20650 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MHLNE_20650 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
HHH_8
BRCT_2
RUBY_RBDX
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
WXJ82694
LinkDB
All DBs
Position
complement(2017402..2019405)
Genome browser
AA seq
667 aa
AA seq
DB search
MDLAEARQRVEELRRLIEEHNYRYYVLDQPVISDREYDTLMQELIALEETYPELLTPDSP
SQRVGGAPREEFNPVRHPEVLLSLNDAFNEGDLLDFDRRVREITGGEVSYLIEPKIDGLT
VALTYIDGVFSLGATRGDGQVGEEVTANLRTIPLLPLRLRRPLPHLVVRGEVYMPKAAFA
RLNAEREEAGEPLFANPRNAAAGSLRQLDPKVTASRNLSLFVYQVISVTGAQVATQAAAL
DFLAELGLPVNPYRFLARDIQAVLAEIKAWTPERRAALPYEIDGLVIKVNDLALHAVLGA
TAKAPRWAVAYKFPAEQATTRVEGIILRVGRTGVLTPTAVLTPVRLAGTTVSRATLHNED
YIREKDIRIGDTVVIQKAGDIIPEVVEVLPEHRTGAEEVFTMPEKCPACGAAVVRPPGEA
AHRCTGGLACPAQVLEGIIHFASRGAMDIQGLGPAIVAQLLEAGLIRDAADLYYLQKEDL
LKLERFGEQSASNLIAAIAAAKDRPLERLLFGLGIRHVGERAARTLASHFGSLEKLIAAS
EEELTSLPDIGPRIAASIREFFAEPRNLAVLEKLKKAGVRMEAERAAAPAGPLSGKTFVI
TGTLPGLTRQEAEELITRAGGKVVSSVSKKTDYLVAGEKPGSKYTRALELGVPVIDVTEL
KELLKEV
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggatctggctgaggcccggcagagggtagaagaactgcggcgcctgatcgaagagcac
aattaccgctactatgtcctcgaccagccggtgatcagcgaccgggaatacgacaccctg
atgcaggaattaatagccctggaagaaacctacccggaactcctgacaccggattctccc
agccagcgggtaggcggagcgccccgggaagaattcaaccccgtccggcatccggaagtt
ttattgagtttaaatgacgccttcaatgaaggtgatttgctggatttcgaccgccgggtg
cgggaaataaccggcggagaggtgtcctatcttatcgagcccaagatagacggcctgacg
gtggccctcacctatattgacggggtttttagcctgggggccacccggggcgacggccag
gtgggagaagaggtaacggcgaatctacggaccatcccgttgcttcccctgcgcttgcgg
cgccccctgccccacctggtagtgcggggggaagtctacatgcccaaggcagcctttgcc
cgcctgaacgccgaacgggaagaggccggggagcccctcttcgccaacccccgcaatgcc
gcggccggatctctgcgccagctggatcccaaagtgacggccagccgcaatttaagcctt
ttcgtttaccaggttatcagcgtcaccggggcacaagttgctacccaggccgccgccctg
gacttcctggccgaactgggcctgcccgtcaacccctaccgcttcctggcccgggacatc
caggctgtgctggcagaaataaaggcctggacaccggagcgccgtgctgccttgccctat
gaaatcgacggcctggtgatcaaggttaacgatctggccctccatgccgtcctgggggcg
acggccaaagcaccgcgctgggccgtggcctataaattcccggccgagcaggcgacgacc
cgggtggaagggattatcctccgggtagggcgcacgggcgtcctgacaccaacagctgta
ttaacgccggtgcgcctggccggaactaccgtcagccgggctaccttgcataatgaagac
tacatccgggaaaaggacattcgcatcggcgacacggtggttatccagaaggccggcgac
atcatcccggaagtggtggaggtcctgcccgaacatcgtaccggagcggaagaggttttt
accatgccggagaagtgcccggcctgcggcgcggcagtagttcgcccgccgggagaagcg
gcccaccgctgtaccgggggtttagcctgcccggcccaggtcctggaagggatcatccac
tttgcctccaggggagccatggacatccagggcctggggccggccatcgtcgcccaactc
cttgaggccggcctcatccgtgatgcggccgacctctactacctgcaaaaggaagacctg
ttaaagctggagcgctttggcgagcagtcggccagcaacctcattgcggccattgccgca
gccaaggacaggcccctggaacgcctgcttttcggcctgggcattcgccatgtgggcgag
cgggcggcgcggaccctggccagccacttcggctccctggagaagctaatcgcggcctca
gaggaggaattgacctccctgcccgatataggcccccgtattgctgcgagtatccgggaa
ttttttgccgaaccgagaaatctggccgtcctggagaagctgaaaaaagccggggtacga
atggaagctgaaagagcggccgctccggccgggcctttaagcggcaagacctttgtcatc
accggcaccctgccgggccttacccgccaggaggcagaagagctcattacccgcgccggg
ggcaaggttgtaagcagcgtgagcaaaaagaccgattacctggtggccggcgaaaagccg
ggttccaagtacacccgcgccctggaactgggggtgccggtgatagatgttacagagtta
aaggaattattgaaggaggtatag
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