Microcella humidisoli: NNL39_09110
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Entry
NNL39_09110 CDS
T09551
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mhum
Microcella humidisoli
Pathway
mhum03030
DNA replication
mhum03410
Base excision repair
mhum03420
Nucleotide excision repair
mhum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mhum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NNL39_09110 (ligA)
03410 Base excision repair
NNL39_09110 (ligA)
03420 Nucleotide excision repair
NNL39_09110 (ligA)
03430 Mismatch repair
NNL39_09110 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mhum03032
]
NNL39_09110 (ligA)
03400 DNA repair and recombination proteins [BR:
mhum03400
]
NNL39_09110 (ligA)
Enzymes [BR:
mhum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NNL39_09110 (ligA)
DNA replication proteins [BR:
mhum03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NNL39_09110 (ligA)
DNA repair and recombination proteins [BR:
mhum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NNL39_09110 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NNL39_09110 (ligA)
MMR (mismatch excision repair)
DNA ligase
NNL39_09110 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NNL39_09110 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
UTT63799
LinkDB
All DBs
Position
1887768..1890068
Genome browser
AA seq
766 aa
AA seq
DB search
MDARGVDDLTRDEARTEVEALTSRILELRDAYYARDTVLEDDATYDALVRRLELIEHAFP
ELQSQDSPTQTVGGVAETTLFAPVEHAERMLSLDNVFSAEEFAEWAAKVERDAGRSVRWL
CELKIDGLALNLRYERGQLVTAATRGDGRVGEDVTQNVLRVAGIPTRLAGDPDELPDLVE
VRGEVFIPKAAFDELNALQREAGEREFANPRNAASGSLRQKAEGKNDEQLARMRDRLSRL
RMLVHGIGAWPNPPVTAQSEVYGLLERWGLPISSHFRVHDSATDAAEYIAFHGEHRHAVE
HEIDGVVVKVDELALHGELGATSRAPRWAIAYKYPPEQVNTTLLDIVVSVGRTGRATPFA
VMEKVRVAGSEVRQATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEVLGPVVELRDGTERE
FVMPTNCPECGTELRPAKEGDIDLRCPNARSCPAQVRGRVEHIGSRGALDIEGLGEISAA
ALTQPLVPDAPPLVTEAALFDLTVEQLLPIEVIVRDAETGLPKLDDDGEAKRRSPFRRVE
QRYGPEAAGLDAGELRARGIRKQAVTVPSALATQLLDELEKAKTKPLWRLLVSLNIRHVG
PVAARALADWFGSLEAIRAASLDELAAVDGVGAIIAEAVQEWFAVDWHVEIVERWAAAGV
QFTTPGHAGPGAAAAAGGVLAGLTVVATGSLEGFTREGAQEAIIAAGGKAASSVSKKTDF
VAAGPGAGSKLAKAEELGVRIIDAAQFAVLVREGPDALGLDEGATS
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
gtggatgcccgcggtgttgatgacctgacgcgcgacgaggcccgcaccgaggtcgaggcg
ctcacgagccgcatcctcgagctgcgcgacgcctactacgcgcgcgacaccgtgctggag
gacgacgccacctacgacgccctcgtgcggcggctcgagctcatcgagcacgcgttcccc
gagctgcagagccaggacagcccgacgcagaccgtcggcggcgtcgccgagacgaccctc
ttcgccccggtcgagcacgccgaacgcatgctgagcctcgacaacgtgttcagcgccgag
gagttcgccgagtgggccgcgaaggtcgagcgcgacgccggccggtcggtgcggtggctg
tgcgagctcaagatcgacggcctggccctcaacctgcgctacgagcgcgggcagctcgtc
acggccgccacgcgcggcgacggacgcgtgggcgaagacgtcacgcagaacgtgctgcgt
gtggcgggcatcccgactcggctcgcgggcgaccccgacgagctgcccgacctcgtcgaa
gtgcgcggcgaggtcttcattccgaaggcggcgttcgacgagctcaacgccctgcagcgc
gaggcgggcgagcgcgagttcgccaacccgcgcaacgcggcgagcggcagcctgcgccag
aaggcggagggcaagaacgacgagcagctcgcgcgcatgcgcgatcgcctcagccgactc
cggatgctcgtgcacggcatcggcgcctggccgaacccgcccgtcaccgcgcagagcgag
gtctacggcctgctcgagcgctggggtctgccgatcagcagccacttccgcgtgcacgac
agcgccaccgacgccgccgagtacatcgccttccacggcgagcaccgccatgccgtcgag
cacgagatcgacggcgtcgtcgtgaaggtcgacgagctggccctgcacggcgagctcggc
gcgacgagccgcgccccgcgctgggcgatcgcctacaagtacccgcccgagcaggtcaac
acgacactgctcgacatcgtcgtgagcgtcggccgcacgggtcgcgccactcccttcgcc
gtgatggagaaggtgcgcgtcgccggcagcgaggtgcggcaggccacgctgcacaatcaa
gacgtcgtcaaggcgaagggcgtgctcatcggtgacaccgtcgtgctgcgcaaggccggc
gatgtgatccccgaagtgctcgggccggtcgtcgagctgcgcgacggcaccgaacgcgag
ttcgtcatgccgacgaactgccccgagtgcggcaccgagctgcggcccgcgaaagagggc
gacatcgacctgcgctgccccaacgcgcgcagctgccccgcccaggtgcgcggtcgcgtc
gagcacatcggcagccgcggggccctcgacatcgaagggctcggcgagatcagcgcggca
gcgctcacgcagccgctggttccggatgctccgcccctcgtcaccgaagccgcactcttc
gacctcaccgtcgagcagctgctccccatcgaggtcatcgtgcgcgacgccgagaccggg
ctgccgaagctcgacgacgacggcgaggccaagcgtcggtcgccgttccggcgggtcgaa
caacgctacggacccgaggccgccgggctcgacgccggcgagctgcgcgcgcgcggcatc
cgcaagcaggcggtcactgtgccgagcgcgctcgcgacgcagctgctcgacgagctcgag
aaggcgaagacgaagcccctgtggcggctcctcgtgtcgctcaacatccgtcatgtcggg
ccggtcgcggcccgtgcgcttgccgactggttcgggtcgctggaggcgattcgcgcggcg
agccttgacgagctcgcggcggtcgacggcgtgggtgcgatcatcgccgaggcggtgcag
gagtggttcgcggtcgactggcacgtcgagatcgtcgagcgctgggctgccgccggcgtg
cagttcacgacgcccggccacgccgggcccggtgcggccgccgcggccgggggagtgctc
gcggggctcaccgtcgtcgccaccggatcactcgagggcttcacgcgcgagggagcccag
gaggccatcatcgcggcgggcggcaaggcggccagcagcgtctcgaagaagaccgacttc
gtcgccgcggggcccggagccggctcgaagctcgcgaaggccgaagagctcggtgtgcgc
atcatcgatgccgcgcagttcgcggtactcgtgcgcgaggggcccgatgccctgggtctt
gacgagggcgcgacgtcctga
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