Microbacter sp. GSS18: P0L94_04045
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Entry
P0L94_04045 CDS
T08893
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mica
Microbacter sp. GSS18
Pathway
mica03030
DNA replication
mica03410
Base excision repair
mica03420
Nucleotide excision repair
mica03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mica00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P0L94_04045 (ligA)
03410 Base excision repair
P0L94_04045 (ligA)
03420 Nucleotide excision repair
P0L94_04045 (ligA)
03430 Mismatch repair
P0L94_04045 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mica03032
]
P0L94_04045 (ligA)
03400 DNA repair and recombination proteins [BR:
mica03400
]
P0L94_04045 (ligA)
Enzymes [BR:
mica01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P0L94_04045 (ligA)
DNA replication proteins [BR:
mica03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P0L94_04045 (ligA)
DNA repair and recombination proteins [BR:
mica03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P0L94_04045 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P0L94_04045 (ligA)
MMR (mismatch excision repair)
DNA ligase
P0L94_04045 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P0L94_04045 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WES65248
LinkDB
All DBs
Position
857246..859606
Genome browser
AA seq
786 aa
AA seq
DB search
MTDAAFSDDLSLADARDEARALTDRILSAREAYYGADAELVDDATYDAWMRRLEELERMH
PELQGQDSPTQTVGAAETTMLAPVEHAERMLSLDNVFSADELREWCAKTAAAAGRAVRWL
TELKIDGLAISLRYEDGMLTSAATRGDGRVGEDVTVNALRVAGIPQRLSGDGHPPIVEVR
GEVFIPVAEFERLNALQATMRDRAVDEARSRARSFDEERARLSAERRFPAFANPRNAASG
GLRQQLDKKDGLELEARRARLASLRLFVHGIGAWSEPPVAAQSEVYDLLASWGLPASPYF
RTCDDVEGVMDFVAHYGEHRHDVEHEIDGVVVKVDELALHDELGATSRAPRWAIAYKYPP
EQVNTRLLDIVVSVGRTGRATPYAVMAPARVSGSVVRQATLHNQDVVKAKGVLIGDTVVL
RKAGDVIPEVLGPVVELRDGTERTFVMPENCPECGSPLAPAKEGDIDLRCPNTRACPAQV
RGRVEHIGSRGALDIEALGEVTAAALTQPSEPRTPPLETEAGLFDLRLDQLVPIEVVVRD
AETGEPRIDEQTGAIVRRSPFQRSEKTYPPGWEDATPAERRAAGIRKDHVVLHPSAQALT
LLDEIEKAKTKDLWRFLVALNIRHVGPVAARALAQWFGSVAAIREATRDELAAVDGVGGI
IADSLIDWFEVDWHREIVERWQAAGAQLATPGHPGPGAASADGGVLEGLTVVATGSLEGY
TREGAQEAIIRAGGKAASSVSKKTDFVAAGPGAGSKLAKAEQLGIRILDAAQFRVLVEQG
PGALDS
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
gtgacggatgccgcattctccgacgatctgagcctcgccgacgcccgcgatgaggcccgg
gcgctgaccgaccgcatcctctcggctcgcgaggcgtactacggcgccgatgccgagctc
gtcgacgacgcgacctacgacgcgtggatgcggcggctcgaagagctcgagcgcatgcac
cccgagctgcagggccaggactcgccgacccagaccgtgggcgcggccgagacgacgatg
ctggcacccgtcgagcacgccgagcgcatgctgagcctcgacaacgtcttctcggccgac
gagctgcgcgaatggtgcgcgaagaccgcggcggcggccggccgggccgtgcgctggctg
accgagctcaagatcgacggcctcgccatcagcctgcgctacgaggacggcatgctcacg
tcggcggccacgcgcggcgacggccgcgtgggcgaggacgtcaccgtcaacgcgctgcgc
gtggccggcatccctcagcggctgtcgggcgacgggcacccgccgatcgtggaggtgcgc
ggcgaggtcttcatcccggtcgccgagttcgagcggctcaacgcgctgcaggcgacgatg
cgcgatcgcgcggtggacgaagcgcgctcgcgagcgcggtcgttcgacgaggagcgcgcg
cggctcagcgccgagcggcgcttccccgccttcgccaacccgcgcaacgccgccagcggc
ggcctgcggcagcagctcgacaagaaggacggcctcgagctcgaggccaggcgcgcgcgc
ctggcgtcgctgcgccttttcgtccacggcatcggggcgtggagcgagccgcccgtggcc
gcgcagagcgaggtgtacgacctgctcgcgtcgtgggggctgcccgccagcccgtacttc
cgaacgtgtgacgacgtcgagggcgtcatggacttcgtcgcgcactacggcgagcaccgc
cacgacgtcgagcacgagatcgacggtgtcgtcgtcaaggtcgacgagctcgcgctgcac
gatgagctgggggcgaccagccgcgcgccgcgatgggcgatcgcgtacaagtacccgccc
gagcaggtgaacacccggctcctcgacatcgtggtgtcggtggggcgcaccggccgcgcg
acgccgtacgccgtcatggcgcccgctcgcgtgtcgggcagcgtcgtgcggcaggcgacc
ctgcacaaccaggacgtcgtgaaggccaagggcgtgctgatcggcgacaccgtggtgctg
cgcaaggccggcgacgtgatccccgaagtgctcgggcccgtcgtcgagctgcgcgacggc
accgagcggaccttcgtgatgcccgagaactgccccgaatgcggatcgccgctcgccccc
gccaaggagggcgacatcgacctgcgctgcccgaacacccgcgcctgcccggcgcaggtg
cgcggccgcgtcgagcacatcggctcgcgcggcgctctcgacatcgaggcgctgggcgaa
gtgacagccgccgccctgactcagccctctgagccgcgcacgccgcccctcgagaccgaa
gcgggcctgttcgacctgcgtctggaccagctcgtcccgatcgaggtcgtcgtgcgcgac
gccgagaccggcgaaccgcgcatcgacgagcagaccggcgccatcgtgcgccgctcaccg
ttccagcgctccgagaagacctaccctcccggatgggaggacgccacgcccgccgagcgc
cgtgccgccggcatccgcaaggaccacgtggtgctccacccctcggcacaggccctcact
ctcctggacgagatcgagaaggccaagacgaaggatctgtggcgcttcctggtggcgctg
aacatccggcacgtcggcccggtggcagcccgcgcactcgcgcagtggttcggctcggtc
gccgccatccgcgaggccacccgcgacgagctcgccgccgtcgacggcgtcggaggcatc
atcgccgactcgctgatcgactggttcgaggtcgactggcaccgcgagatcgtcgagcgg
tggcaggccgccggcgcgcagctggcgacgcccggtcacccggggcccggcgccgcttct
gcggacggaggagtgctcgaggggttgacggttgtcgcgaccggatcgctcgagggctac
acgcgcgagggcgcgcaggaggcgatcatccgtgccggcggcaaggccgcatcgagcgtg
tcgaagaagaccgacttcgtcgcggcgggtccgggagccggctcgaagctcgccaaggcc
gagcagctgggcatccgcatcctcgacgccgcccagttccgcgttctggtcgagcagggc
ccgggggcgctggacagctga
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