Microbulbifer aggregans: AUP74_02213
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Entry
AUP74_02213 CDS
T04560
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
micc
Microbulbifer aggregans
Pathway
micc03030
DNA replication
micc03410
Base excision repair
micc03420
Nucleotide excision repair
micc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
micc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AUP74_02213 (ligA)
03410 Base excision repair
AUP74_02213 (ligA)
03420 Nucleotide excision repair
AUP74_02213 (ligA)
03430 Mismatch repair
AUP74_02213 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
micc03032
]
AUP74_02213 (ligA)
03400 DNA repair and recombination proteins [BR:
micc03400
]
AUP74_02213 (ligA)
Enzymes [BR:
micc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AUP74_02213 (ligA)
DNA replication proteins [BR:
micc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AUP74_02213 (ligA)
DNA repair and recombination proteins [BR:
micc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AUP74_02213 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AUP74_02213 (ligA)
MMR (mismatch excision repair)
DNA ligase
AUP74_02213 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AUP74_02213 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
DZR_2
AphA_like
PTCB-BRCT
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AOS97623
UniProt:
A0A1C9W903
LinkDB
All DBs
Position
2529785..2531824
Genome browser
AA seq
679 aa
AA seq
DB search
MTDNKVPVEKRERAQELHDILQRANYQYYVLDAPELPDVEYDRRIRELQELEAEYPELVS
PDSPTQRVGAAPLTEFAEVRHQVPMLSLDNAFDDDELREFDRRVRDRLNSPDAVEYACEP
KLDGIAISLLYRDGVLERAATRGDGTTGEDITQNVRTIGSVPLRLREKDVPQVLEVRGEI
YMPKAGFAELNEKARKDGEKIFVNPRNAAAGSLRQLDSRVTAQRPLELCAYGVGQVEGAE
LPERHTEVLKQLNRWGFRINKEMLVAEDIDACIEYHRQLGEKREGLPYDIDGIVFKVNSI
PLQRRLGFVARAPRWAMAYKFPAQEEMTELLDVEFQVGRTGAVTPVARLKPVFVGGVTVS
NATLHNRDEIKRLGVKIGDTVVVRRAGDVIPQVVSVVESKRRADARDIVFPDHCPVCGSP
VESTPGEAVARCSGGLICSAQRKQAIKHFASRKAMDVDGLGDKLVDQLVDEGLLHSVSGL
FHLTKEQVAGLERMGEKSAQNLLDALERSKDTTLPKFLYALGIREVGEATARNLARHFGD
LGPLMQASEEDLQEVEDVGPVVAHFVAEFFQQTHAQEEIEALRQAGVHWFPEETGGEAQP
LAGQTWVLTGKLETLSRSEGKDYLQRLGAKVAGSVSANTDMVVAGPGAGSKLNKARELDI
SVMDEDQFLDFLRENGVEI
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgaccgataacaaagtccccgtagaaaagcgcgagcgcgctcaggagctgcacgacatc
ctgcagcgggccaactatcagtactatgttctggatgcgccggagctgccagatgttgag
tatgaccgtcgcatccgcgagctgcaggagctggaagcggagtaccccgaactcgtttct
ccggattccccgacccaacgtgtcggcgcggcaccactgacggaattcgccgaggttcgc
caccaggtcccaatgctctctctcgacaatgctttcgacgatgacgagctgcgcgagttc
gatcgtcgtgtacgcgacaggctcaacagcccggatgcggtggagtacgcctgtgaaccg
aagctcgatggtattgccatcagcctgctttaccgcgatggggtgctggagcgggcagcg
actcgcggcgacggtaccaccggtgaagacattactcagaatgtgcgcacgatcggctcg
gtacccctgcgcctgcgcgaaaaagatgtgccgcaggtgctggaggtgcgcggcgagatc
tacatgcccaaggcgggctttgccgaattgaacgaaaaggcccgcaaagacggtgagaaa
attttcgtcaatccgcgcaatgcggcggcgggcagcctgcggcagctggattctcgcgta
actgcacagcggccacttgagctctgcgcatacggcgtagggcaggtagaaggggcagag
ctgccagagcggcatacggaagttctcaagcagttgaatcgctggggctttcgcatcaac
aaggaaatgctggtcgccgaggatattgatgcgtgtatcgaatatcaccggcaactgggt
gagaagcgggagggactcccttacgatatcgacggtatcgtgttcaaggtgaacagcata
ccgctgcagcggcgattgggttttgtcgcccgcgcaccgcgatgggccatggcttacaag
tttcccgcccaggaagagatgacggagctgctggatgtggaatttcaggtaggtcgcacg
ggtgcagtgacccccgtggcccgattgaagcccgtgttcgtcggcggcgttaccgtttcc
aatgcgacgttgcacaaccgcgatgaaatcaaacgcctgggtgtaaagatcggcgatacc
gtcgtggtccgcagggccggggacgtgattccccaggtggtctcggtggtcgagagcaag
cgtcgggccgatgcccgcgatattgtgtttcccgatcactgcccggtctgtggctcaccg
gtggagtctacgcccggcgaggccgtcgcccgctgttccggtggcctgatctgcagcgcg
cagcgcaagcaggccatcaaacactttgcatcccgcaaggcaatggatgttgatggtctc
ggtgacaagctcgtcgaccagctggtggatgaggggttgctgcattctgtttcgggcctg
tttcacctgacaaaagagcaggtggccgggctggagcgaatgggggaaaagtcagctcag
aacctgctcgacgcgctggagcggagcaaggacaccactttaccgaaattcctctatgcg
ctgggcattcgtgaggttggcgaggccaccgcgcgcaatctggcccgccattttggtgac
ctggggccactgatgcaggccagtgaagaggacttgcaggaggtcgaggatgttgggccg
gtagtggcacacttcgttgccgaatttttccagcagacgcatgctcaggaggaaatcgag
gcgttgcgtcaggccggcgtacactggttccccgaggagaccggcggcgaagcgcagccg
ctggccgggcagacctgggtgctgaccggtaagctggaaaccctgtcgcgcagcgagggc
aaggactacctgcaacggctgggtgccaaagtggcaggcagcgtttctgcaaatacagac
atggtagtggccggtccgggagcgggttcaaaactgaacaaggcgcgggaactggatatc
tctgtgatggatgaggaccagttcctggatttcctgcgtgaaaacggggttgaaatctaa
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