Microbacterium sp. RG1: EHF32_05150
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Entry
EHF32_05150 CDS
T10164
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mice Microbacterium sp. RG1
Pathway
mice03030
DNA replication
mice03410
Base excision repair
mice03420
Nucleotide excision repair
mice03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mice00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EHF32_05150 (ligA)
03410 Base excision repair
EHF32_05150 (ligA)
03420 Nucleotide excision repair
EHF32_05150 (ligA)
03430 Mismatch repair
EHF32_05150 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mice03032
]
EHF32_05150 (ligA)
03400 DNA repair and recombination proteins [BR:
mice03400
]
EHF32_05150 (ligA)
Enzymes [BR:
mice01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EHF32_05150 (ligA)
DNA replication proteins [BR:
mice03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EHF32_05150 (ligA)
DNA repair and recombination proteins [BR:
mice03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EHF32_05150 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EHF32_05150 (ligA)
MMR (mismatch excision repair)
DNA ligase
EHF32_05150 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EHF32_05150 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
AAA_5
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QCQ18127
LinkDB
All DBs
Position
complement(1073241..1075556)
Genome browser
AA seq
771 aa
AA seq
DB search
MDDDTTLAEARAEAAELTERILRARDAYYGEDAELVDDATYDGWIRRLEELERLHPEVQT
QDSPTLSVGAASTTMFAPVEHAERMLSLDNVFSPDELRDWCVKTQASAGRPVRWLTELKI
DGLAISLRYENGVLTSAATRGDGRIGEDVTVNALRVQGISERLSGTGHPPLVEVRGEVFI
PVAAFEELNALQSRMRERIIEQARERGNLTEERARLSADRRFPAFANPRNAASGGLRQQL
DKKDGLELEAGRARLASLRLFVHGIGAWTAPPVASQSEIYDLLAEWGLPTSPYYKTFDDI
DGVLDFVAHYGEHRHDVEHELDGIVVKVDELALHEELGATSRAPRWAIAYKYPPEQVNTR
LLDIVVSVGRTGRATPFAVMAPARVAGSVVRQATLHNQDVVKVKGVLIGDMVVLRKAGDV
IPEVLGPVVELRDGSERAFVMPRDCPVCGTPLAPAKEGDVDLRCPNARSCPAQVRGRVEH
IGSRGALDIEALGEVTAAALTQADGGARAPLDTEAGLFDLTLDELVPIEVVVRDAETGEP
KLDDATGEPVLRAPFRRNPTPAERKSGLLTPQPSAQALTLLDELEKAKTKELWRFIVALN
VRHVGPVAARALAQWFGSVSAIRSASREELAAVEGVGGIIADAVIAWFEIDWHREIVERW
EAAGAQLATPGHPGPGAAVVEGGVLDGLTVVATGTLEGYTREGAQEAILAAGGKAGSSVS
KKTDFVAAGPGAGSKLAKAEQLGVRIIDAAQFRILVEQGPAALDALAPDAG
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atcgacgatgacacgaccctcgcagaggctcgtgcggaagcggcggagctgacggagcgc
atcctccgcgcccgtgacgcctactacggcgaagacgccgagctcgtcgacgacgccacc
tacgacggctggatccgtcggctggaagagctggagcggctgcatccggaggtgcagacc
caggactcgcccacgctcagcgtcggcgcggcatccaccacgatgttcgcacccgtcgag
cacgccgagcggatgctcagcctcgacaacgtgttcagcccggacgagctgcgggactgg
tgcgtcaagacccaggcctccgcggggcgtccggtgcggtggctgaccgagctgaagatc
gacgggctcgcgatcagtctccgctacgagaacggtgtgctcacctccgccgccacgcgc
ggcgacgggcgcatcggcgaagacgtcaccgtcaacgcgctgcgcgtccagggcatctcc
gaacgcctgagcggcaccggtcacccccctctcgtcgaggtgcgcggcgaggtcttcatc
ccggtcgcggccttcgaggagctcaacgccctccagtcccggatgcgggaacgcatcatc
gagcaggcgcgtgagcgcggcaacctcacggaggagcgtgcgcggctcagtgccgaccgt
cgattcccggcgttcgcgaatccccgcaacgccgccagcggcggactgcgtcagcaactc
gacaagaaggatggtctcgagctcgaggccgggcgggctcgtctcgcgtcgctccggctg
ttcgtgcacggcatcggcgcgtggaccgcgcctccggtggcctcccagagcgagatctac
gacctcctcgcggagtgggggctgccgacgagtccctactacaagaccttcgacgacatc
gacggcgtcctggatttcgtggcgcactacggcgagcaccgtcacgatgtggagcatgaa
ctcgacggaatcgtcgtcaaggtggacgagctcgcgctgcacgaggagctgggcgcgacg
agccgggcgccgcgttgggcgatcgcctacaagtaccctcccgagcaggtgaacacccgc
cttctcgacatcgtcgtctcggtcgggcgaacgggccgtgcgactccgttcgcggtcatg
gcaccggcgcgcgtcgccggctctgtcgtgcgacaggcgacgctgcacaaccaggacgtc
gtcaaggtcaagggcgtgctcatcggagacatggtcgtgctccgcaaagccggcgatgtg
atccccgaggtcctcggtccggtggtcgagctccgcgacggctcggagcgagcgttcgtg
atgccgagagactgtcctgtctgcggcactccgctcgcacccgcgaaggagggcgatgtc
gatctgcgatgcccgaacgcccgctcgtgccccgcgcaggtgcggggccgggtcgagcac
atcggttcgcgtggcgcactcgacatcgaggcgctcggcgaggtgaccgcggcggcgctg
acacaggccgacgggggcgcacgtgcgccgctggacacggaggcaggactgttcgatctg
actctcgatgaactggtcccgatcgaggtcgtcgtccgggatgcggagaccggtgaaccg
aagctcgacgacgccaccggcgagccggtgcttcgcgccccgttccgtcgcaacccgacg
cccgccgagcgcaagtccggactgctgacgccgcagccgtccgcgcaggcactcacgctg
ctcgacgagctcgagaaggcgaagacgaaggagctgtggcgtttcatcgtcgccctcaac
gtccgccatgtcggacccgtcgcggcccgggcgctggcgcagtggttcggatccgtctcg
gcgatccgctcggcgagccgcgaggagctggcggcggtcgagggagtgggcgggatcatc
gcggatgcggtcatcgcctggttcgagatcgactggcaccgcgagatcgtcgagcgctgg
gaggcggcgggagcgcagctggccacgcccggacaccccggtcccggcgccgccgtcgtc
gagggcggcgtgctcgacgggctcacggtcgtggcgaccggcaccctcgagggctatacg
cgcgagggcgcgcaggaggcgatcctcgcggccggcggaaaggcaggctccagcgtctcg
aagaagaccgacttcgtggcggcggggccgggcgccggatccaagctggcgaaggcagaa
cagctcggggtgcgcatcatcgacgccgcgcagttccgcatcctcgtggagcaggggccg
gcggcactcgacgccttggcgccggacgcgggctga
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