Microlunatus sp. Gsoil 973: GJV80_05680
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Entry
GJV80_05680 CDS
T06297
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
micg
Microlunatus sp. Gsoil 973
Pathway
micg03030
DNA replication
micg03410
Base excision repair
micg03420
Nucleotide excision repair
micg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
micg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GJV80_05680 (ligA)
03410 Base excision repair
GJV80_05680 (ligA)
03420 Nucleotide excision repair
GJV80_05680 (ligA)
03430 Mismatch repair
GJV80_05680 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
micg03032
]
GJV80_05680 (ligA)
03400 DNA repair and recombination proteins [BR:
micg03400
]
GJV80_05680 (ligA)
Enzymes [BR:
micg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GJV80_05680 (ligA)
DNA replication proteins [BR:
micg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GJV80_05680 (ligA)
DNA repair and recombination proteins [BR:
micg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GJV80_05680 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GJV80_05680 (ligA)
MMR (mismatch excision repair)
DNA ligase
GJV80_05680 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GJV80_05680 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
BRCT_2
Nlig-Ia
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QGN32366
LinkDB
All DBs
Position
1205616..1207769
Genome browser
AA seq
717 aa
AA seq
DB search
MSQTPDLSDETALRRAEANQVATGRQPTAEARQRHAELSEIIDDARWRYYILDAPTLSDA
EFDRALRELGDLEEEFPSLRTPDSPTQKVGPPPGSTFAPVQHLQRMLSLDNAFSEEELDR
WAQRAIRELGQQQIERSGFLCELKIDGLAIDLTYENGRLVKGATRGDGRVGEDVTDNVRT
IAAIPTRLSGDEVPDVLEVRGEVFLSVEDFTKLNESLVADGKAPFANPRNSAAGSLRQKD
PRITASRNLGFIAHGLGAVEGFRQLNRLSEAYDALSGWGIPVSSHTKLCKTLDEVWSYIG
YYGEHRHSVEHELDGVVIKLDERGVQDQLGSTSRAPRWAIAFKYPPEEVNTRLLDIKVNV
GRTGRVTPYGEMEPVVVAGSTVGFATLHNASEVRRKGVLIGDTIVLRKAGDVIPEIVGPV
VDLRDGSEREFVMPTHCPSCGTELRPEQEGDADIRCPNTRSCPAQLRERLFHLAGRSALD
IEVLGESAAHALLDSGLITDEGDLFDLDEDKLLQTDLFRTKAGRLSANGAKLLANLEEAK
QRPLDRFLVALSIRHLGPGVAPDLAAAFGDVDRIAAASVEELTEVEGVGPTLAQAIADWF
TVDWHREIVAKWQAAGARMKAEERELGEQTLAGMTFVVTGTLSGYTRDSAAEAITSRGGK
VSGSVSKKTDYVVVGESPGSKYEKAVSLKVPILDAEGFEVLLNAGPEAAAEVAKVGG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
gtgagccagacccccgacctctccgacgagaccgccctccgcagggcggaggcaaaccag
gtcgcgaccggccggcagccgaccgccgaggcgcggcagcggcacgccgagctcagcgag
atcatcgacgacgcccggtggcgctactacatcctcgatgcgccgaccctctccgatgcc
gagttcgaccgggccctgcgggagctcggtgatcttgaggaggagttcccgtcactgcgg
acgccggactcgccgacgcagaaggtcggcccgccgcccgggtcgacatttgctccggtg
cagcatctgcagcggatgctgagcctggacaacgcattcagcgaggaggaactcgaccgc
tgggcccagcgggcgatccgtgaactcggccaacagcagatcgaacggtccggattcctc
tgcgagctgaagatcgacggactggccatcgacctcacctacgagaacggccgactggtc
aagggagccactcgcggcgacggcagggtgggtgaggatgtcaccgacaacgtacggacc
attgctgcgatcccgacccggttgagcggggacgaggtccccgacgtgcttgaggtccgt
ggcgaggtcttcctgtcggtggaggacttcaccaagctgaacgagtcgctggtcgccgac
ggcaaggcgccgttcgccaacccgcgcaactccgcggccggatcgttgcgccagaaggat
ccacgcatcaccgccagccgcaatctcggcttcatcgcccacggtctcggcgcggtcgag
gggttccggcagctcaaccggctctccgaggcctacgatgccctctccggctgggggata
ccggtcagctcacacacgaagctgtgcaagaccctggacgaggtctggtcctatatcggc
tactacggcgagcaccgacattcggtcgagcacgagctcgacggtgtggtgatcaagctc
gacgaacgcggggtccaagatcaactcggctccacctcgagagctccgcggtgggcgatc
gcgttcaaatatcctccggaggaggtcaacaccagactgctcgacatcaaggtcaacgtc
ggccgtaccgggcgggtcactccgtacggggagatggagccggtcgtcgtcgccggctcg
acagtcgggttcgccaccctgcacaacgcctcggaggtcaggcgcaagggggtgctgatc
ggcgacaccatcgttttgcgcaaggccggtgacgtcatccccgagatcgtcgggccggtc
gtcgatcttcgggacggcagcgaacgggagttcgtgatgccgacccactgcccgtcctgc
ggcaccgagctgcggccggagcaggagggcgacgccgacatccgctgccccaacaccagg
tcctgcccggcgcaactgcgggaacgtctcttccacctggccggccggtcggccctggac
atcgaggtgctcggcgagtctgccgcccatgcgctgttggactccggtctgatcaccgac
gagggggatctgttcgatcttgacgaggacaagctgctgcagaccgatctgttccggacc
aaggcgggacggttgtcggccaacggggccaaactgctggccaatctcgaagaggccaaa
caacgtccgctggatcgcttcctggttgccctgtccatccggcacctcggtcccggcgtc
gctcccgatcttgcggcggcgttcggtgacgttgacaggatcgccgcggcttctgtcgag
gagctgaccgaggtcgagggagtcggtccgaccctggcgcaggccattgccgactggttc
acggtggactggcatcgcgagatcgtcgccaaatggcaggccgccggcgctcggatgaag
gccgaggagcgtgagctgggcgaacagaccctggccgggatgaccttcgtggtgaccggg
acgctgtccggctacacccgggacagcgcagccgaggcgatcaccagtcgcggtggcaag
gtcagcggctcggtgtcgaagaagaccgactacgtcgtcgtcggagagtcaccgggttcc
aagtatgagaaggcggtcagcctcaaggtgccgatccttgacgccgaaggcttcgaggtg
ctgctgaacgccggacccgaggcggctgccgaggtggccaaggtcggcgggtga
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