Micromonospora sp. HM134: FJK98_06755
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Entry
FJK98_06755 CDS
T06145
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mich
Micromonospora sp. HM134
Pathway
mich03030
DNA replication
mich03410
Base excision repair
mich03420
Nucleotide excision repair
mich03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mich00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FJK98_06755 (ligA)
03410 Base excision repair
FJK98_06755 (ligA)
03420 Nucleotide excision repair
FJK98_06755 (ligA)
03430 Mismatch repair
FJK98_06755 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mich03032
]
FJK98_06755 (ligA)
03400 DNA repair and recombination proteins [BR:
mich03400
]
FJK98_06755 (ligA)
Enzymes [BR:
mich01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FJK98_06755 (ligA)
DNA replication proteins [BR:
mich03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FJK98_06755 (ligA)
DNA repair and recombination proteins [BR:
mich03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FJK98_06755 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FJK98_06755 (ligA)
MMR (mismatch excision repair)
DNA ligase
FJK98_06755 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FJK98_06755 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
HHH_8
DUF5818
EHD_N
zf-TFIIB
Motif
Other DBs
NCBI-ProteinID:
QDY06908
UniProt:
A0A518WCE4
LinkDB
All DBs
Position
1440048..1442186
Genome browser
AA seq
712 aa
AA seq
DB search
MSEEEIPQQVSAEQEAAAGGEPTPEARERHATLSQELTEHQYRYYVLDAPTITDAEFDRQ
LRELEALEAEYPALRTPDSPTQRVGGTFSTDFTPVTHAERMLSLDNAFADEELAAWAERV
ERDAGGPVPYLCELKVDGLAINLTYEKGRLVRAATRGDGRTGEDVTANVRSIRGVPARLT
PSDEFPDVPELLEVRGEIYFPVAGFADLNASLVEQGKAPFANPRNAAAGSLRQKDPRITA
SRPLRLVVHGTGARTGFRPATQSESYAALKAWGLPTSDRWRVVPDLAGVAGYIAHYAEHR
HDVEHEIDGVVVKVDPVPIQGRLGSTSRAPRWAIAFKYPPEEVNTRLLDIEVGVGRTGRI
TPYAVLEPVHVAGSTVAQATLHNAREVERKGVLIGDTVVLRKAGDVIPEVLGPVAELRPA
DARPFVMPTHCPSCGTALAPAKESDVDIRCPNTRSCPAQLRERVFHLAGRGGFDIEVLGY
KGAAALLDAEIISDEGDLFALDAAQLARSPFFVNKDGSLGTNATKLLDNLAVARERDLWR
VLVALSIRHVGPTAAQALARHFRSVEAIEAAAEEELSSVDGVGPTIAASIKEWFAVDWHR
DVVRKWAEAGVRMAEEAVDEGPRPLEGVTVVVTGTLAGFSRDQAAEAIQTRGGKVTGSVS
KKTGFVVVGDNPGSKADKAAGLKVPVLDEDGFRVLLDAGPDAAREVARVDES
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggaagaagagattccccagcaggtcagcgcggagcaggaggcggcggccggcggc
gagcccacccccgaggcccgggagcggcacgccacgttgagccaggagctgaccgagcac
cagtaccgctactacgtcctcgacgcgccgaccatcaccgacgccgagttcgacaggcag
ttgcgggagctggaggcgttggaggcggagtacccggcgctgcgcacccccgactcgccg
acgcagcgggtgggcggcaccttctccaccgacttcaccccggtcacccacgccgagcgg
atgctctcgctggacaacgcgttcgccgacgaggagttggccgcctgggccgaacgcgtc
gagcgggacgccggtggcccggtgccctacctgtgcgagctgaaggtcgacggcctggcc
atcaacctgacctacgagaagggccggctggtccgcgccgccacccggggcgacgggcgc
acgggcgaggacgtcaccgccaacgtccgtagcatccgcggcgtgccggcccggctcacc
ccgtccgacgagttccccgacgtgccggagctgctggaggtgcggggcgagatctacttc
ccggtcgccgggttcgccgacctcaacgccagcctggtcgagcagggcaaggcgccgttc
gccaacccgcgcaacgccgccgccggcagcctgcgccagaaggacccccggatcaccgcg
tcccggccgctgcggctggtggtgcacggcaccggggcccgcaccggcttccggccggcc
acccagtccgagtcgtacgcggcgctgaaggcgtgggggctgccgaccagcgaccgctgg
cgggtggtgcccgacctggccggtgtggcggggtacatcgcccactacgccgagcaccgg
cacgacgtcgagcacgagatcgacggggtggtggtcaaggtcgacccggtgcccatccag
ggccggctcggctcgaccagccgggcgccccgctgggcgatcgccttcaagtatccgccg
gaggaggtcaacaccaggctgctcgacatcgaggtcggggtcgggcggaccggccggatc
accccgtacgcggtgctggagccggtgcacgtggccggttcgacggtcgcccaggccacc
ctgcacaacgcccgcgaggtcgaacgcaagggggtgctgatcggcgacacggtggtgctg
cgcaaggccggcgacgtgatccccgaggtgctcggcccggtggccgagctgcgtcccgcc
gacgcccgcccgttcgtcatgcccacccactgcccgtcctgcggcacggcgctcgccccc
gccaaggagagcgacgtcgacatccgctgcccgaacacccgcagttgcccggcgcagctg
cgggagcgggtcttccacctcgccgggcggggcgggttcgacatcgaggtgctcggctac
aagggcgccgccgcgctgctggacgccgagatcatcagcgacgagggggacctgttcgcc
ctcgacgccgcacagctcgcccggtcgccgttcttcgtcaacaaggacggcagcctcggc
accaacgccaccaagctgctcgacaacctcgccgtggcccgggaacgcgacctgtggcgg
gtgctggtggcgctctccatccggcacgtcgggccgaccgccgcgcaggccctggcccgg
cacttccgctccgtcgaggcgatcgaggcggccgccgaggaggagctgtcctcggtcgac
ggggtcggcccgaccatcgccgccagcatcaaggaatggttcgccgtcgactggcaccgc
gacgtggtccgcaagtgggccgaggcgggcgtacggatggccgaggaggcggtcgacgag
gggccccgcccgttggagggcgtcaccgtggtggtgaccggcacgctcgccgggttcagc
cgggaccaggcggccgaggcgatccagacgcggggcggcaaggtcaccggctcggtctcc
aagaagaccggcttcgtggtggtgggcgacaaccccggttccaaggccgacaaggcggcc
ggcctcaaggtgccggtgctcgacgaggacggtttccgggtgctgctcgacgccggcccg
gacgcggcccgcgaggtggcccgggtcgacgagagctga
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