Microbacterium sp. HA-8: AB2L57_10260
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Entry
AB2L57_10260 CDS
T10924
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mici Microbacterium sp. HA-8
Pathway
mici03030
DNA replication
mici03410
Base excision repair
mici03420
Nucleotide excision repair
mici03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mici00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB2L57_10260 (ligA)
03410 Base excision repair
AB2L57_10260 (ligA)
03420 Nucleotide excision repair
AB2L57_10260 (ligA)
03430 Mismatch repair
AB2L57_10260 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mici03032
]
AB2L57_10260 (ligA)
03400 DNA repair and recombination proteins [BR:
mici03400
]
AB2L57_10260 (ligA)
Enzymes [BR:
mici01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AB2L57_10260 (ligA)
DNA replication proteins [BR:
mici03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AB2L57_10260 (ligA)
DNA repair and recombination proteins [BR:
mici03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AB2L57_10260 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB2L57_10260 (ligA)
MMR (mismatch excision repair)
DNA ligase
AB2L57_10260 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB2L57_10260 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
HHH
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
XLP02144
LinkDB
All DBs
Position
2158286..2160628
Genome browser
AA seq
780 aa
AA seq
DB search
MASDVPPSALPDLTLEQARDESRALADRIVEAREAYYGRDTVVVDDATYDGWMLRLEAIE
RLYPELQGQDSPTRQVGAAQGALFAPVEHAERMLSLDNVFSLDELREWCLKAEVGAGRPV
RWLTELKIDGLAISLRYENGVLTSAATRGDGRVGEDVTFNAVRVSGIPQRLEGEGHPPIV
EVRGEVFIPVEAFAALNALQAEMRERAIEETRARSRVFDAERARLSAERRFPAFANPRNA
ASGGLRQQLDKKDGLEREAGQARLDSLRLFVHGIGAWEHPPVAAQSEIYALLAEWGLPTS
PYFRTADSVDAVLSFVEHYGEHRHDVEHEIDGIVVKVDELALHDELGATSRAPRWAIAYK
YPPEQVNTKLLDIVVSVGRTGRATPFAVMAPARVAGSVVRQATLHNQDVVRAKGVLIGDT
VVLRKAGDVIPEVLGPVVELRDGTEREFVMPADCPECGWALSPAKEGDIDLRCPNTRACP
AQVRGRVEHIGSRGALDIEALGEVTAAALTQPSHPAVAPLETEAGLFEITIDQLVPIEVV
VRDAETGEPRVDDKTGEPVRRAPFRRNPSADEKKRGITTAQPSVQAVRLIDELEKAKTKD
LWRFLVALNIRHVGPVAARALAQWFGSIDAIRAASRDELAAVDGVGGIIADALIDWFTVD
WHRDIVGRWAAAGAQLATPGHPGPGAAEGAGGVLAGLTVVATGSLEGYSREGAQEAIIRA
GGKAASSVSKKTDFVAAGPGAGSKLAKAEQLGLRIIDAAQFHVLVTEGPAALGDGSAANA
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
gtggcatccgacgtccccccatccgctcttcccgatctgacgctcgagcaggcgcgagac
gagtcgcgtgcactcgccgaccgcatcgtcgaggcgcgtgaggcgtactacgggcgcgac
acggtcgtcgtcgacgatgcgacgtacgacgggtggatgctgcggctcgaggccatcgag
cggctgtaccccgagctgcagggccaggactcgcccacgcgtcaggtgggcgcggcccag
ggcgcgctgttcgcgcccgtcgagcacgccgagcgcatgctgagtctcgacaacgtcttc
tccctcgatgagctgcgggagtggtgcctcaaagccgaggtcggcgccgggcggccggtg
cggtggctgacggagctgaagatcgacggcctcgccatcagcctgcgctacgagaacggc
gtgctcacctccgcggcgacgcgcggcgacggccgggtcggcgaggacgtgacgttcaac
gcggtgcgggtttccggcatcccgcagcgcctcgagggcgagggtcatccgccgatcgtc
gaggtgcgcggggaggtcttcatcccggtcgaggccttcgccgcgctcaacgcgctgcag
gccgagatgcgcgagcgggcgatcgaggagacacgggcgcgctcgcgcgtcttcgacgcg
gaacgcgcgcgcctgagcgccgagcgcaggttccccgctttcgccaatccgcgcaacgcc
gccagcggagggctgcgccagcagctcgacaagaaggacgggctcgagcgtgaggcgggg
caggcccgtctggattcgctgcgcctgttcgtgcacggaatcggggcgtgggagcatccg
cccgtcgccgcgcagagcgagatctacgcgttgctggccgagtgggggcttccgacgagt
ccgtacttccgcaccgcggactccgtcgacgccgtgctctccttcgtcgagcactacggc
gagcaccggcacgacgtcgagcacgagatcgacggcatcgtcgtcaaggtcgacgagctc
gccctgcacgacgaactgggcgccaccagtcgcgcgccgcgctgggccatcgcgtacaag
tacccgcccgagcaggtcaacaccaagctgctcgacatcgtggtctcggtggggcgcacc
gggcgtgcgaccccgttcgcggtcatggcgccggctcgggtcgcggggtccgtcgtgcgg
caggcgaccctgcacaaccaggacgtcgtgcgcgccaagggcgtgctcatcggcgacacc
gtggtgctgcgcaaggccggcgatgtcatccccgaggtgctggggcccgtggtggagctg
cgcgatggcaccgaacgcgagttcgtgatgcctgccgactgccccgaatgcggatgggca
ctgtcccccgccaaggagggggacatcgatctgcgctgccccaacacgcgggcgtgcccc
gcgcaggtgcgcggtcgcgtcgagcacatcggatcgcgcggtgctctcgacatcgaggcg
ctcggcgaggtgaccgcggcggccctcacccagccgtcccatcccgccgtcgctcccctc
gagaccgaggcggggctgttcgagatcacgatcgaccagctggtaccgatcgaggtggtc
gtccgcgacgccgagaccggtgagccccgcgtcgacgacaagacgggcgagcccgtgcgt
cgggcgcccttccgtcgcaacccctcggccgacgagaagaagcgcggcatcacgaccgcc
caaccctccgtccaggcggtgcgcctgatcgacgagctcgagaaggccaagacgaaggac
ctctggagattcctcgtcgccctgaacatccggcatgtcggccccgtcgcggctcgggcg
ctcgcgcagtggttcggatcgatcgatgccatccgcgcggcgtcgcgcgacgagctcgcg
gccgtcgacggtgtcggcggcatcatcgccgacgcgctcatcgactggttcaccgtggac
tggcatcgtgacatcgtcggacgctgggcggccgcgggcgctcagctggcgacgcccggg
catccgggcccgggggccgcggagggtgcgggaggggtgctcgcgggactgaccgtcgtc
gccacgggctcgctcgagggctactcccgcgagggagcgcaggaggccatcatccgcgcg
ggtggcaaggccgcctcgagcgtgtcgaagaagaccgattttgtcgcggcgggcccgggc
gcgggttccaagctcgccaaggccgagcaactcgggctccgtattatcgacgccgcgcaa
ttccacgtgctcgtcaccgaggggccggcggcgctcggtgacggctcggccgcgaacgcc
tga
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