Micromonospora sp. SH-82: WHN02_10285
Help
Entry
WHN02_10285 CDS
T11153
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
micn Micromonospora sp. SH-82
Pathway
micn03030
DNA replication
micn03410
Base excision repair
micn03420
Nucleotide excision repair
micn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
micn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WHN02_10285 (ligA)
03410 Base excision repair
WHN02_10285 (ligA)
03420 Nucleotide excision repair
WHN02_10285 (ligA)
03430 Mismatch repair
WHN02_10285 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
micn03032
]
WHN02_10285 (ligA)
03400 DNA repair and recombination proteins [BR:
micn03400
]
WHN02_10285 (ligA)
Enzymes [BR:
micn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WHN02_10285 (ligA)
DNA replication proteins [BR:
micn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WHN02_10285 (ligA)
DNA repair and recombination proteins [BR:
micn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WHN02_10285 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WHN02_10285 (ligA)
MMR (mismatch excision repair)
DNA ligase
WHN02_10285 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WHN02_10285 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
XXG10470
LinkDB
All DBs
Position
2218849..2220984
Genome browser
AA seq
711 aa
AA seq
DB search
MPEEAIGGQVSAAQEAAAGAEPTPLARDRHATLSQELTEHQYRYYVLDAPTVSDADFDRQ
LRELEALEEQFPALRTPDSPTQRVGGTFSTDFTPVTHAERMMSLDNAFADEELAAWAERV
ERDAGGTVPYLCELKVDGLAINLTYEGGRLVRAATRGDGRTGEDVTANVRSIRDVPARLT
ASAEFAEVPEFVEVRGEIYFPVAAFADLNATLVEQGKAPFANPRNAAAGSLRQKDPRVTA
SRPLRLVVHGIGARRGFQPRTQSESYAALRAWGLPVSDRSRVVPDLTGVAEYIAHYAQHR
HDVEHEIDGVVVKVDPVSIQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIDVNVGRTGRV
TPFAVLEPVRVAGSTVALATLHNAREVERKGVLIGDTVVLRKAGDVIPEVLGPVVELRPA
DARPFVMPTTCPACGTPLAPAKEADVDIRCPNSRSCPAQLRERVFHLAGRGAFDIEVLGY
KGASALLDAQVITDEGDLFTLDAGQLARSEFFVNKDGSLGSNATKLLDNLAVARERDLWR
VLVALSIRHVGPTAAQALARHFRSMGAIEQAGEAELSSVDGVGPTIAVSIREWFAVDWHR
EVVRKWAEAGVRMVEEGGDEGPRPLEGLTVVVTGTLTGFSRDQAAEAIQTRGGKVTGSVS
KKTGFVVVGDNPGSKADKAATLKVPILDEAGFQVLLDAGPDAAREVARIEG
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
gtgccggaggaggccatcggcgggcaggtcagtgcggcacaggaggcggctgccggcgcg
gagccgacgcccctggcccgggaccggcacgcgacgttgagccaggagctcaccgagcac
cagtaccgctactacgtgctcgacgcgccgaccgtctccgacgccgacttcgacaggcag
ctgcgcgagctggaggcgctggaggagcagttccccgcgctgcggaccccggactcgccg
acgcagcgggtcgggggcaccttctccaccgacttcaccccggtcacccacgccgagcgg
atgatgtcgctggacaacgccttcgccgacgaggagctggcggcctgggccgagcgggtc
gagcgggacgccggcgggacggtcccctacctgtgcgagctgaaggtcgacggcctggcg
atcaacctgacctacgaggggggtcggctggtccgggcggcgacccggggggacggacgc
acaggtgaggacgtgacagccaacgtccgcagcatccgcgacgtaccggcccggctcacc
gcgtcggccgagttcgcggaggtgccggagttcgtcgaggtccggggggagatctacttc
ccggtggccgccttcgccgacctgaacgccaccctggtcgagcagggcaaggcgccgttc
gccaacccccgtaacgccgccgccggcagcctgcgccagaaggacccccgggtcaccgcg
tcccggccgctgcgcctggtggtgcacggcatcggcgcccggcgcggcttccaaccccgg
acccagtccgagtcgtacgcggcgctgcgggcctggggactgcccgtcagcgaccggtcc
cgggtggtccccgacctgaccggggtggccgagtacatcgcccactacgcccaacaccgg
cacgacgtcgagcacgagatcgacggggtggtggtgaaggtcgacccggtctccatccag
ggtcggctcggctccaccagtcgggcaccacgctgggcgatcgccttcaagtaccccccg
gaggaggtcaacaccaagctcctcgacatcgacgtcaacgtcggccggaccggccgggtc
acccccttcgccgtcctggagccggtccgggtggcggggtccacggtggcgctggcgacc
ctgcacaacgcccgcgaggtggaacgcaagggcgtcctgatcggtgacacagtggtcctg
cgcaaggccggggacgtgatccccgaggtgctcggcccggtggtggagctgcgtccggcc
gacgcccgaccgttcgtcatgccgaccacctgtccggcgtgtgggaccccgctggccccg
gccaaggaggcggacgtcgacatccgctgccccaacagccggtcctgccccgcccagctg
cgtgagcgggtcttccacctcgccgggcggggtgccttcgacatcgaggtgctcggctac
aagggggcgtccgccctgctggacgcgcaggtcatcaccgacgagggggacctgttcacc
ctcgacgccgggcagctggcccgctcggagttcttcgtcaacaaggacggcagtctgggc
agcaacgccaccaagctgctggacaacctcgccgtcgccagggaacgcgacctgtggcgg
gtgctcgtcgcactctccatcagacacgtcgggccgaccgccgcacaggccctggccagg
cacttccggtcgatgggggcgatcgagcaggccggtgaggccgaactctcctccgtggac
ggcgtcggcccgaccatcgcggtgagcatcagggagtggttcgccgtcgactggcaccgc
gaggtggtccgcaagtgggccgaggcgggcgtacggatggtcgaggagggcggcgacgag
ggaccccgaccgttggaggggctgacggtggtggtcaccggcaccctgaccgggttcagc
cgggaccaggcggccgaggcgatccagacgcgcgggggcaaggtgaccggttcggtgtcc
aagaagaccggtttcgtggtggtcggcgacaaccccggctccaaggccgacaaggcggcc
accctcaaggtcccgatcctcgacgaggcgggtttccaggtcctgctcgacgccggtccc
gatgcggcccgggaggtggcccggatcgaggggtga
DBGET
integrated database retrieval system
