Microvirga thermotolerans: GDR74_13310
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Entry
GDR74_13310 CDS
T06255
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mico
Microvirga thermotolerans
Pathway
mico03030
DNA replication
mico03410
Base excision repair
mico03420
Nucleotide excision repair
mico03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mico00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GDR74_13310 (ligA)
03410 Base excision repair
GDR74_13310 (ligA)
03420 Nucleotide excision repair
GDR74_13310 (ligA)
03430 Mismatch repair
GDR74_13310 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mico03032
]
GDR74_13310 (ligA)
03400 DNA repair and recombination proteins [BR:
mico03400
]
GDR74_13310 (ligA)
Enzymes [BR:
mico01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GDR74_13310 (ligA)
DNA replication proteins [BR:
mico03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GDR74_13310 (ligA)
DNA repair and recombination proteins [BR:
mico03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GDR74_13310 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GDR74_13310 (ligA)
MMR (mismatch excision repair)
DNA ligase
GDR74_13310 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GDR74_13310 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
Smoa_sbd
FdhE_central
Motif
Other DBs
NCBI-ProteinID:
QFU17119
UniProt:
A0A5P9JY13
LinkDB
All DBs
Position
complement(2806619..2808775)
Genome browser
AA seq
718 aa
AA seq
DB search
MARHKTSSDTPVDRLSLAEAQAEHHMLGREIAEHDRRYYEEDAPTVSDAEYDALRRRYEA
LEARFPELSSAESLTRKVGARASEKFAKIRHRAAMLSLANAFEDVEVEEFVERIRRFLQL
KPEAELLFTAEPKIDGLSLSLRYEEGRLVSAATRGDGAVGEDVTANARTVHDIPHRLAGS
KIPEVFEVRGEVYLSHKDFAAINERQAAAGKPLFANPRNAAAGSLRQLDPSITASRPLCF
FAYGWGEASEMPATTQHGMIEALAGFGFRTNPLTRLCASVGEMLAHYHAIEADRANLGYD
IDGVVYKVDDLALQTRLGYVSRSPRWALAHKFPAQQAFTVLEDIEINVGRTGSLNPIAKL
KPVTVGGVVVSNATLHNEDYIKGIGGDGQPIRNGVDIRIGDTVVVLRAGDVIPKVLDVVL
DKRPPEAKPYVFPTVCPACGSHAVREVNPRTGKEDSVRRCTGGLICPAQARERLKHFVSR
NAFDIEGLGEQRIEEFYAEGLIRSPQDIFTLEARNAASLQRLEKREGWGATSAKNLFAAI
EARRTVALNRFIFALGIPHIGETSARLLARHFGTFEALRETARAAADPASEAHAELTAIG
GIGPVVAEAIVEFFKEKHNEEMLDALLAQVTVEPMEAAVTQSPVAGKTVVFTGSLEQMTR
EEAKAMAERLGAKVAGSVSRKTDIVVAGPGAGSKLDKAKEFNVQVLDEDGWFALVGRP
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggcccggcacaagacttcctcggacactcccgtcgaccggctctccctcgccgaggcc
caggccgagcaccacatgctcgggcgcgagatcgcggagcacgaccggcgctactacgag
gaggatgcgccgaccgtctcggatgccgagtacgacgccctgcgccgccgctacgaggcg
ctggaggcgcggttccccgagctgtcgagcgccgagagcctgacgcggaaggtcggcgcc
agggcctccgagaaattcgccaagatccgccaccgggcggcgatgctctccctcgccaac
gccttcgaggacgtggaggtggaggagttcgtggagcggatccgccgcttcctccagctc
aagccggaggcggagctcctgttcaccgcggagccgaagatcgacggcctgtccctgagc
ctgcgctacgaggagggccgcctcgtgagcgcggcgacccgcggcgacggcgcggtgggc
gaggacgtcaccgccaacgcccgcacggttcacgacatcccccaccggctcgcgggttcg
aagatccccgaggtgttcgaggtgcgcggcgaggtctatctctcgcacaaggacttcgcc
gccatcaacgagcgccaggcggcggcaggcaagccgctcttcgccaatccccgcaacgcg
gcggcgggcagcctgcggcagctcgatccgtcgatcaccgcctcgcggcccctgtgcttc
ttcgcctatggctggggcgaggcgagcgagatgccggcgacgacccagcacgggatgatc
gaggccctcgccggcttcggcttcagaacgaatccgctcacgcgcctgtgcgcgagcgtc
ggggagatgctggcgcattaccacgccatcgaggccgaccgggccaatctcggctacgac
atcgacggcgtggtctacaaggtggacgacctcgcgctccagacgcgcctcggctacgtg
tcccgctcgccccgctgggcgctggcgcacaagttccccgcgcagcaggccttcacggtg
ctggaggacatcgagatcaacgtgggccgcacgggctcgctcaaccccatcgccaagctg
aagcccgtcaccgtgggcggcgtggtggtgtcgaacgccaccctgcacaacgaggactac
atcaagggcatcggcggcgacgggcagccgatccgcaacggcgtcgacatccgcatcggc
gacacggtggtggtgctcagggcgggcgacgtgatcccgaaggtgctcgacgtggtgctc
gacaagcgcccgcccgaggcgaagccctatgtctttccgacggtctgccccgcctgcggc
agccatgcggtgcgcgaggtcaacccgcgcacgggcaaggaggattcggtgcgccgctgc
accggcgggctgatctgccccgcccaggcgcgggagcggctgaagcacttcgtctcccgg
aacgccttcgacatcgaggggctgggcgagcagcgcatcgaggagttctacgcggagggg
ctgatccggagcccgcaggacatcttcaccctggaagcgcgcaatgccgcaagcctccag
cggctcgagaagcgggaaggatggggagcgaccagcgcgaagaacctgttcgcggccatc
gaggcgcgccgcaccgtcgcgctcaaccgcttcatcttcgccctgggcatcccgcatatc
ggcgaaacctcggcccggctcctcgccaggcatttcggcaccttcgaggccctgcgggag
acggcgagggccgccgccgatcccgcctcggaggcccatgcggagctgaccgccatcggc
ggcatcggtccggtcgtggcggaggccatcgtcgagttcttcaaggagaagcacaacgag
gagatgctcgacgcgcttctcgcgcaggtgacggtcgaacccatggaggcggctgtcacg
cagtcccccgtcgccggcaagaccgtggtgttcaccggctccctggagcagatgacgcgg
gaggaggccaaggccatggccgagcgcctcggcgccaaggtggcgggctccgtctccagg
aagaccgacatcgtggtcgccggtccgggcgcgggctcgaagctcgacaaggcgaaggag
ttcaacgtccaggtcctcgacgaggacggctggttcgcgctcgtgggccgcccgtga
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