Micrococcus sp. HOU01: SOY78_09755
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Entry
SOY78_09755 CDS
T10249
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
micu Micrococcus sp. HOU01
Pathway
micu03030
DNA replication
micu03410
Base excision repair
micu03420
Nucleotide excision repair
micu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
micu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SOY78_09755 (ligA)
03410 Base excision repair
SOY78_09755 (ligA)
03420 Nucleotide excision repair
SOY78_09755 (ligA)
03430 Mismatch repair
SOY78_09755 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
micu03032
]
SOY78_09755 (ligA)
03400 DNA repair and recombination proteins [BR:
micu03400
]
SOY78_09755 (ligA)
Enzymes [BR:
micu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SOY78_09755 (ligA)
DNA replication proteins [BR:
micu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SOY78_09755 (ligA)
DNA repair and recombination proteins [BR:
micu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SOY78_09755 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SOY78_09755 (ligA)
MMR (mismatch excision repair)
DNA ligase
SOY78_09755 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SOY78_09755 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Auto_anti-p27
DUF7855_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WRQ43271
LinkDB
All DBs
Position
complement(2115904..2118297)
Genome browser
AA seq
797 aa
AA seq
DB search
MSTPKESAAQPDPQDIPAADLREEYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLE
DLEALHPELVSNDSPTQEVGGEVSEAFAPVRHGARMYSLEDLFSVEELEVWFRRAAQALT
QVRPGVAPRWLVEVKIDGLAVALRYRDGRLVQAATRGDGVTGEDVTANVRTIGDIPHELS
GEGWPAEFEVRGEVFMSSAAFAELNARRAEEGQTPFANPRNAAAGALRQKDPAVTAQRPL
AMFVHGIGSVEAFGLDSQHEVYDALAGWDLPVSPYTRRVEGADEEAVAAVVAVIEEYGRR
RHELIHEIDGIVLKADAFADQRYLGHTSRVPRWAAAYKYPPEEVHTLLRDIAVSVGRTGR
VTPFAVMEPVTVAGSTVSLATLHNQDVVKAKGVLIGDTVVVRKAGDVIPEVVGPVLPLRE
KAIEAGRELREFVMPAHCPSCGTPLAPAKEGDVDLRCPNARSCPAQLAGRVEHLASRGAF
DVEALGEEAARWLVQGPGEDPAEHEGHVRPEGPGPITAEAQIFDLASGTPEEITGPRGED
GLTDLQRSLGAVRVWREGRTKVDGRLVPSGVFTLKPYFFTAGTAKKPSAPTANTLRLFDE
LEKAKSQPLWRTLVALSIRHVGPTAARSLATAFGSMAALRAAAEAGDRDRLAEIDGVGPI
IADALIEWFAEDWHREIVDRWAAAGVVMEDEQDESTPRTLEGLTVVVTGSLEGFSRDSAK
EAILVRGGKASGSVSKKTDFLVAGDAAGSKLDKAQSLGVPVLDEAGFTALLAGGPDAVRP
ADTDDATDGAADGEASA
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacccccaaggaatccgccgcccagcccgatccgcaggacatccccgccgcggac
ctgcgggaggagtacgaggacctcgtggagcgggtccgcgccgcccggaccgcctactac
cagcgggacgccccggagatctcggacgccgagtacgacgcgctgtaccgccgcctcgag
gacctcgaggccctccaccccgagctcgtgtccaacgactcgcccacccaggaggtcggc
ggggaggtctcggaggcgttcgcccccgtccggcacggggcccgcatgtactcgctcgag
gacctgttctccgtcgaggagctcgaggtctggttccgccgcgcggcgcaggccctgacg
caggtgcggccgggcgtggcgccccgctggctcgtggaggtgaagatcgacgggctcgcc
gtcgccctgcgctaccgggacgggcggctcgtgcaggccgccacccgcggcgacggtgtc
acgggcgaggacgtcaccgccaacgtgcgcaccatcggggacatcccgcacgagctctcc
ggcgagggctggcccgccgagttcgaggtgcgcggcgaggtgttcatgtcctccgccgcc
ttcgccgagctcaacgcgcgccgtgcggaggagggccagacgccgttcgcgaacccgcgc
aacgccgccgccggcgccctgcgtcagaaggaccccgcggtcaccgcgcagcgcccgctg
gccatgttcgtgcacggcatcggctcggtcgaggcgttcgggctggactcccagcacgag
gtgtacgacgcgctcgcgggctgggacctgcccgtgagcccctacacccgccgagtggag
ggcgcggacgaggaggcggtggccgccgtcgtcgcggtgatcgaggagtacggccggcgt
cggcacgagctgatccacgagatcgacggcatcgtgctgaaggcggacgcgttcgcggac
cagcgctacctcggccacacctcccgcgtgccccgctgggccgcggcgtacaagtacccg
ccggaggaggtgcacacgctgctgcgggacatcgcggtctcggtgggccgcaccgggcgg
gtgaccccgttcgcggtgatggagccggtcaccgtggccgggtccaccgtctccctggcc
accctgcacaaccaggacgtggtcaaggccaagggcgtgctgatcggggacaccgtggtg
gtgcgcaaggccggggacgtcatccccgaggtcgtgggccccgtgctgccgctgcgtgag
aaggcgatcgaggcgggccgggagctgcgcgagttcgtcatgcccgcgcactgcccgtca
tgcggcacgccgctggcccccgccaaggagggggacgtggacctgcgctgccccaacgcc
cgctcctgcccggcccagctggccggccgcgtcgagcacctggccagccgcggcgccttc
gacgtggaggcgctcggcgaggaggccgcccgctggctcgtccagggccccggcgaggac
ccggccgagcacgaggggcacgtgcggcccgagggcccgggccccatcacggcggaggcg
cagatcttcgacctcgcctccggcacgccggaggagatcacgggcccccggggcgaggac
gggttgacggacctgcagcgctccctcggcgcggtgcgcgtgtggcgcgagggccgcacg
aaggtggacggccgcctggtgccctcgggcgtgttcacgctcaagccgtacttcttcacc
gccggcaccgcgaagaagccgtccgcgcccacggccaacacgctgcgcctgttcgacgag
ctcgagaaggccaagtcccagccgctctggcgcaccctcgtggcgctgtccatccggcac
gtgggcccgacggcggcccgctcgctggccacggcgttcggctcgatggcggcgctgcgc
gcggcggccgaggccggcgaccgggaccggctggccgagatcgacggcgtcggcccgatc
atcgcggacgcgctcatcgagtggttcgccgaggactggcaccgggagatcgtggaccgg
tgggccgcggcgggcgtggtcatggaggacgagcaggacgagtccaccccgcgcacgctc
gagggcctgaccgtggtggtcaccggctcgctcgagggcttctcccgcgactccgcgaag
gaggcgatcctcgtgcgcggcggcaaggcctccgggtccgtgtccaagaagaccgacttc
ctggtggccggcgacgccgccggctccaaactggacaaggcgcagtccctcggtgtgccc
gtgctggacgaggccgggttcacggcgctgctggccggcggcccggacgcggtgcgcccg
gcggacacggacgatgccaccgacggcgccgcagacggggaggcctcggcatga
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