Microbulbifer sp. YPW1: HUW35_13880
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Entry
HUW35_13880 CDS
T10374
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
micy Microbulbifer sp. YPW1
Pathway
micy03030
DNA replication
micy03410
Base excision repair
micy03420
Nucleotide excision repair
micy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
micy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HUW35_13880 (ligA)
03410 Base excision repair
HUW35_13880 (ligA)
03420 Nucleotide excision repair
HUW35_13880 (ligA)
03430 Mismatch repair
HUW35_13880 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
micy03032
]
HUW35_13880 (ligA)
03400 DNA repair and recombination proteins [BR:
micy03400
]
HUW35_13880 (ligA)
Enzymes [BR:
micy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HUW35_13880 (ligA)
DNA replication proteins [BR:
micy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HUW35_13880 (ligA)
DNA repair and recombination proteins [BR:
micy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HUW35_13880 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HUW35_13880 (ligA)
MMR (mismatch excision repair)
DNA ligase
HUW35_13880 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HUW35_13880 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
5_3_exonuc
AphA_like
PTCB-BRCT
zf-C2H2_ZFAND2
Motif
Other DBs
NCBI-ProteinID:
QKX17966
LinkDB
All DBs
Position
3419151..3421187
Genome browser
AA seq
678 aa
AA seq
DB search
MTKSIPQEKQQRVNELHEILNRANYEYYVLDTPELPDVEYDRCLRELQELEREYPQLITS
DSPTQRVGAEPLAAFTQIRHEMPMLSLDNAFNDEEMEDFDRRIRDRLNSSAPVEYACEPK
LDGIAVSLLYRQGILERAATRGDGTVGEDITQNVRTIYSVPLKLLDEDVPPVLEVRGEIY
MPKAGFDALNEKARAAGEKGFVNPRNAAAGSLRQLDSRITAQRPLELCVYSVGVVEGGDL
PERHSEVLEQLNRWGFRINSEMAVAEDIQACIEYHRKLGEKRAQLPYDIDGIVFKVNSIP
LQRRLGFVARAPRWATAYKFPAQEEMTRLLDVEFQVGRTGAVTPVARLEPVFVGGVTVSN
ATLHNRDEIARLGVKIGDTVIIRRAGDVIPQVVSVVESRRPQDARDIEFPAHCPVCDSPV
EATPGEAVARCSGGLICSAQRKQAIKHFASRKAMDIDGLGDKLVEQLVDEGLLKSVSGLY
HLSLEPLTGLERMGEKSAQNLLDALERSKSTTLPKFLYALGIREVGEATARNLARHFGDL
EHLMQADSEALQQVDDVGPVVAHYVAEFFEQPHNLEEIAALQQAGVHWEAEVQEEGSQPL
AGQTWVLTGKLETLSRSEAKDYLQRLGAKVAGSVSANTHTVVAGPGAGSKLNKARDLDLP
VLDEEGLMAMLREQGIEI
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagagcattccccaggaaaaacagcagcgcgtcaacgaactgcacgaaatcctc
aaccgcgccaattacgaatactatgtgctggacacaccggaattgccggatgtggagtac
gaccgttgtctgcgcgaactgcaggagcttgagcgtgaatacccgcaactgattacctct
gattcacccacccagcgcgtgggcgctgagcctctcgccgcattcacccagatccgccac
gagatgcccatgctgtcgctggacaatgcgttcaacgatgaagagatggaagactttgac
cgccgcatccgcgatcgcctgaacagcagtgcgccggtggaatatgcctgtgaacccaag
ctggatggcattgccgtgagcttgctgtatcgccaggggattctcgagcgtgcagccacc
cgcggtgatggcactgtgggtgaagatatcacccagaatgtgcgcactatctattctgtc
ccgctgaagttgctcgacgaagacgtgccgccggtgctggaggtgcgcggtgaaatttac
atgccgaaggcggggttcgatgccctgaatgaaaaggcccgggccgccggggaaaagggg
tttgtaaacccgcgcaatgcggccgctggcagcttgcgccagttggactcgcggattacc
gcgcagcgcccgctggaattatgtgtgtacagcgtcggtgtcgtggagggcggcgacttg
cccgagcgccactctgaagtgctcgagcagctgaatcgctgggggttccgcatcaatagt
gaaatggcggtggcggaggatatacaggcgtgtatcgagtaccaccgcaagctgggcgag
aagcgtgcgcagctgccgtacgatatcgacggcattgtgttcaaggttaacagtattccg
ctgcagcgccgcctgggatttgtggcgcgggcgccgcgctgggccaccgcgtataaattt
cccgcgcaggaggagatgacccgcttgctggatgtggaattccaggtgggacgcaccggt
gcggtgacgccggtggcgcgcctggagccggtgtttgtgggtggcgtaaccgtgtccaat
gccacgctgcacaatcgcgatgaaattgcccgcctcggggtaaagatcggcgatacggtg
ataatccgtcgcgcgggtgatgtgattccccaggtggtttccgtggtggaaagtcgccgt
ccgcaagatgcccgggatatcgagtttcccgcgcactgcccggtgtgcgattcgccggtc
gaggcgacccccggcgaagccgttgcccgctgtagtggcggacttatttgcagtgcccag
cgcaagcaggcgatcaagcattttgcctctcgcaaggccatggatattgatgggctcggc
gacaaactggtggagcagcttgtggacgaggggctgctaaagtccgtatccggcctttac
cacctgtccctcgagcccctgaccggtctcgagcgcatgggcgaaaagtcggcccagaat
ctgctcgatgcgctggagaggagcaaaagtacaaccctgcccaaatttctctacgcgctg
gggattcgcgaggtgggcgaggccacagcgcgcaatctggcgcggcacttcggcgatctc
gaacatctgatgcaggcggacagtgaggccctgcaacaggtcgatgatgtgggcccggta
gtagctcactatgtggcagagttcttcgagcagccccataacctggaggaaattgccgcg
ctgcagcaggccggtgtgcactgggaagcggaggtgcaggaagagggctcgcagccactg
gctgggcagacctgggtattgaccggcaagcttgagaccctgtctcgcagcgaggccaag
gattacctgcagcggctcggcgccaaggtggcaggcagtgtctctgccaacacccatacg
gtggtggcggggccaggtgccggttcaaaactgaacaaggcgcgcgacctcgatctgccg
gtgctcgatgaagaagggctgatggccatgttgcgtgagcagggtattgaaatttaa
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