Microbulbifer sp. A4B17: BTJ40_08235
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Entry
BTJ40_08235 CDS
T05421
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mii
Microbulbifer sp. A4B17
Pathway
mii03030
DNA replication
mii03410
Base excision repair
mii03420
Nucleotide excision repair
mii03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BTJ40_08235 (ligA)
03410 Base excision repair
BTJ40_08235 (ligA)
03420 Nucleotide excision repair
BTJ40_08235 (ligA)
03430 Mismatch repair
BTJ40_08235 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mii03032
]
BTJ40_08235 (ligA)
03400 DNA repair and recombination proteins [BR:
mii03400
]
BTJ40_08235 (ligA)
Enzymes [BR:
mii01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BTJ40_08235 (ligA)
DNA replication proteins [BR:
mii03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BTJ40_08235 (ligA)
DNA repair and recombination proteins [BR:
mii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BTJ40_08235 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BTJ40_08235 (ligA)
MMR (mismatch excision repair)
DNA ligase
BTJ40_08235 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BTJ40_08235 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
AphA_like
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AWF80790
UniProt:
A0A2S1JQW8
LinkDB
All DBs
Position
1811026..1813077
Genome browser
AA seq
683 aa
AA seq
DB search
MTHQTISPQVRERVQELHEILQRANHQYYVLDDPELPDIEYDRRLRELQDLESEYPQLLT
PDSPTQRVGAEPLSSFQEVRHEVAMLSLDNAFSDEELLEFDRRVCERLNSKGPVEYACEP
KLDGIAISLLYRNGVLERAATRGDGTTGEDITQNVRTVGSVPLRLRQPDGVEKYPNVLEV
RGEIYMPKAGFAELNRKAAEAGEKLFVNPRNAAAGSLRQLDSRITAQRPLELCVYGTGLV
EGGELPEEHVETLQLLGHWGFRTNREMRVAKDIQGCIDYYREIGEKREDLAYDIDGIVFK
VNSIPLQRRLGFVARAPRWAMAYKFPAQEEMTELLDVEFQVGRTGAVTPVARLQPVFVGG
VTVSNATLHNRDEIERLGVQVGDTVIIRRAGDVIPQVVSVVESKRKPGGHAIEFPSLCPV
CGSPVESTPGEAVVRCSGGLICSAQRKQAIKHFASRKAMDIDGLGDKLVEQLVDEGLLHS
VSGLYHLTLEQVAGLERMGQKSAQNLLDALERSKETTLPKFLYALGIREVGEATARNLAR
HFGELNPLMSADVEALQEVEDVGPVVAHFVAEFFQQPHAQEEVEALQQAGVHWQAEESDE
QDQPLAGQTWVLTGKLETLSRSEAKDYLQRLGAKVAGSVSAKTGTLVAGPGAGSKLTKAQ
ELGITVMDEEALLDMLRERGFEI
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgactcatcaaactatttccccccaagtgcgcgaacgtgttcaggaattacatgaaatc
ctccagcgtgcgaatcaccaatactatgtgcttgatgatcctgagttgccggatattgag
tacgaccggcgcctgcgcgagttgcaggatctcgaaagtgaatatcctcagctgctgaca
ccggactcacccacccagagggtaggtgcagagccgctttcctcttttcaggaagttcgc
catgaagtggcgatgttgtcattggataacgcctttagcgatgaagagttgttggagttt
gatcgccgagtgtgcgaacgactcaatagtaaagggccggtggaatatgcctgtgagcct
aagttagacggtatcgctatcagccttttgtaccgtaatggggtccttgagcgagctgca
acgcgaggggacggcacgacgggtgaggatattacccagaatgtacgtactgtagggtct
gttccactgcgcttgcgccagccggacggtgttgaaaagtacccgaatgtattggaggtg
cgcggtgagatctatatgcccaaggcgggttttgccgaattaaatcgcaaagcggccgag
gcgggtgagaagctttttgtaaatcctcgcaacgctgccgctggcagtttgcgtcagttg
gactcccgcataacagcgcagagaccgctggaattgtgtgtgtatggcacaggtcttgta
gagggcggtgagctgccggaggagcacgttgagaccttgcagctgctcggacactggggc
ttccgtacaaaccgggaaatgcgcgttgctaaagatatccagggttgcatcgactactac
cgtgaaataggcgagaagcgcgaggacctcgcttacgatatcgacggtattgtttttaag
gtcaacagtattcccttgcagcgccgtctcggttttgtcgcccgcgcgccgcgctgggct
atggcctataagtttcctgcccaggaggaaatgaccgaactgctggatgttgaattccag
gtagggcgtaccggcgcagtgacgccagttgctcgcctgcagccggtgtttgtcggtggt
gtcaccgtttccaatgcaactctacacaatcgcgatgagattgagcgtctcggggtgcag
gtgggtgataccgtcattattcgccgcgccggggatgtaattcctcaagtggtctctgtt
gtagagagtaagcgcaagccgggcggccacgctattgaatttccctctctctgcccggta
tgcggctcgccggtggaatctacgcccggtgaggcggtggtccgttgtagcggtggcctg
atttgcagtgcccagcgcaaacaggcgattaagcactttgcctcgcgcaaggcgatggat
atcgatgggttgggagacaagctggtagagcaactggtagatgaaggccttttacactcc
gtgtccgggctctaccacctgacgctggagcaggtggcggggcttgagcgaatggggcaa
aagtctgcccagaatctcctcgatgcattggagcgcagtaaagagaccacgctgccaaaa
ttcctttatgccctgggtatccgagaagtgggtgaggctacagcgcgcaatttggcgcgg
cactttggcgaattgaatccgttaatgtcggcagatgtcgaggctttgcaggaagttgaa
gatgtgggtccagtggtcgctcattttgttgctgagttttttcagcaacctcatgcccaa
gaagaggtagaggcgctgcagcaggcgggtgtgcattggcaggcggaagagagtgacgag
caggatcagcccctggcggggcaaacctgggtgctaactggcaagttggaaaccctgtct
cgcagcgaagcgaaagactacttgcagcggctgggtgcaaaggtggcgggaagtgtttct
gccaagaccggcaccctggttgccggacccggagcaggctctaaattaaccaaagcgcag
gagctgggtatcacagttatggatgaagaggcgcttctggatatgctgcgcgaaaggggc
tttgaaatttag
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