Microlunatus elymi: FOE78_14615
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Entry
FOE78_14615 CDS
T06101
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mik
Microlunatus elymi
Pathway
mik03030
DNA replication
mik03410
Base excision repair
mik03420
Nucleotide excision repair
mik03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FOE78_14615 (ligA)
03410 Base excision repair
FOE78_14615 (ligA)
03420 Nucleotide excision repair
FOE78_14615 (ligA)
03430 Mismatch repair
FOE78_14615 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mik03032
]
FOE78_14615 (ligA)
03400 DNA repair and recombination proteins [BR:
mik03400
]
FOE78_14615 (ligA)
Enzymes [BR:
mik01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FOE78_14615 (ligA)
DNA replication proteins [BR:
mik03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FOE78_14615 (ligA)
DNA repair and recombination proteins [BR:
mik03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FOE78_14615 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FOE78_14615 (ligA)
MMR (mismatch excision repair)
DNA ligase
FOE78_14615 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FOE78_14615 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QDP96989
UniProt:
A0A516Q0M4
LinkDB
All DBs
Position
complement(3265342..3267516)
Genome browser
AA seq
724 aa
AA seq
DB search
MSATNEMSGGLGRFGVVSESDEIPTESTATVAEPTAESRQQHAELSEQLDEARWRYYILD
QPTISDAEFDRLMRQLQELEEQFPTLRTPDSPTQKVGPPPASSFAPVEHLQRLLSLDNAF
SREELDRWSQRAVRELGQQQIDRSGYLCELKIDGLAIDLVYQQGKLIKGATRGDGRVGED
VTDNIRTITAIPQRLAGDDQPSLLEVRGEVFLSVEDFTKLNESLVADGKPPFANPRNSAA
GSLRQKDPRITASRNLGFIAHGIGAVDGFRADRLSQMYEALSGWGLPVSSHTKLCTTLDE
VQSYIGYYGEHRHSVEHELDGVVIKLDELAVQDQLGSTSRAPRWAIAYKYPPEEVNTKLL
DIKVNVGRTGRVTPYGVMEPVLVAGSTVGFATLHNASEVKRKAVLIGDTVVLRKAGDVIP
EIVGPVVDLRDGTEREFVMPTHCPDCGTELRPEQEGDADIRCPNARHCPAQLRERLYHLA
GRSALDIEMLGEQAAHALLDNGLIADEGDLFDLDADKLAHADLFRTKDGRLSANATKLLE
NLEEAKRRPLERFLVALSIRHLGPGVAPDLAQAFGDIDKIAAATTDELTEVDGIGPTLAQ
AIVDWFAVDWHRDIVAKWQTAGAELKAEERELGEQTLAGLTFVVTGSLSGYTRDSAAEAI
TSRGGKVSGSVSKKTTYVVVGESPGSKYDKAVSLKVPILDAEGFEVLLHAGPDAAAEVAR
TGEQ
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccacgaatgaaatgtcagggggtctcggtagattcggcgtcgtgagcgagagc
gatgagattccgaccgagtcgaccgcgacagttgccgagccgaccgcagagtcgcggcag
cagcatgcggagctgagcgagcaactcgacgaggcgcgctggcgctactacatccttgat
cagccgaccatctccgacgccgagttcgaccggttgatgcggcagttgcaggagttggag
gagcagttcccgaccctgcgcacacccgactcgccgacgcagaaggtcggtccgccgccg
gcgtccagtttcgctccggtggagcatctgcagcgattgctcagcctggacaacgccttc
agccgcgaagagctggaccgctggtcgcaacgagcggtccgcgagctcggccagcagcag
atcgaccgctccggttacctgtgcgagttgaagatcgacggtctggccatcgacctggtc
taccagcagggcaagttgatcaagggcgccacccgcggcgacggccgggtcggcgaggac
gtcaccgacaacatccgcaccatcacggcgatcccgcagcggctggctggtgatgatcaa
ccgagcctgctggaggtgcgcggcgaggtctttctctcggtcgaggacttcaccaaactg
aacgagtcgctggtcgccgacggcaaacccccgttcgccaatccgcgcaactcggcggcc
ggttcactgcggcagaaggatccccggatcaccgccagccgcaatctcgggttcatcgcg
cacggcatcggcgcggtcgacggcttccgcgccgaccggctgtcacagatgtacgaggcg
ctgtccggctgggggttgccggtcagcagccacaccaagctctgcacgaccctggacgag
gtccagtcctacatcggctactacggcgagcatcggcactcggtcgagcacgagctggac
ggcgtggtgatcaagctcgacgagctcgcggtccaagatcaactcggctccacctcgcgg
gcgccgcgttgggcgatcgcctacaaatatccgcccgaggaggtcaacaccaagctgctg
gacatcaaggtcaacgtcggccgaaccggccgggtcactccgtacggggtgatggagccg
gtgctggtggccggttccaccgtcgggttcgccaccctgcacaacgccagtgaggtcaaa
cgcaaggccgtgctgatcggcgacaccgtggtgctgcgcaaggccggcgacgtgatcccg
gagatcgtcggcccggttgttgatcttcgtgacggcactgagcgcgagttcgtgatgccg
acgcactgcccggactgcggcaccgagctgcgtccggagcaggagggcgacgcggacatc
cgttgccccaacgcccggcactgcccggcacagctgcgggagcgcctctaccacctggcc
ggacgttccgcactggacatcgagatgctcggcgagcaggccgcgcatgcgctgctggac
aacggattgatcgccgacgagggcgaccttttcgatcttgatgccgacaagcttgcccac
gccgacctgttccggaccaaggacggccggctgtcggccaacgcgaccaagctgctggag
aatctcgaggaggccaagcgccgtccgctggagcgattcctggtcgcgctgtcgatccgc
cacctcggaccgggggtggcgcccgacctcgcgcaggcgttcggcgacatcgacaagatc
gccgccgcgaccaccgacgagctgaccgaggtggacggtatcggtccgaccctggcgcag
gcgatcgtggactggttcgccgtcgactggcaccgcgacatcgtggccaagtggcagacc
gccggcgccgagttgaaggcagaggaacgcgaactgggggagcagacactggccgggctg
accttcgtggtcaccgggtccttgtccggttacacccgcgacagcgcggccgaggcgatc
accagccgcggtggcaaggtgtccggatcggtgtccaagaagacgacgtacgtggtggtg
ggcgagtcccccggatccaagtacgacaaggcggtcagcctgaaagtgcccatcctggac
gccgagggcttcgaggtgctgctgcacgccggtcccgacgcagccgcggaagtggccagg
accggcgagcagtga
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