Methylacidiphilum infernorum: Minf_1701
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Entry
Minf_1701 CDS
T00727
Symbol
lig
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
min
Methylacidiphilum infernorum
Pathway
min03030
DNA replication
min03410
Base excision repair
min03420
Nucleotide excision repair
min03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
min00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Minf_1701 (lig)
03410 Base excision repair
Minf_1701 (lig)
03420 Nucleotide excision repair
Minf_1701 (lig)
03430 Mismatch repair
Minf_1701 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
min03032
]
Minf_1701 (lig)
03400 DNA repair and recombination proteins [BR:
min03400
]
Minf_1701 (lig)
Enzymes [BR:
min01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Minf_1701 (lig)
DNA replication proteins [BR:
min03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Minf_1701 (lig)
DNA repair and recombination proteins [BR:
min03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Minf_1701 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Minf_1701 (lig)
MMR (mismatch excision repair)
DNA ligase
Minf_1701 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Minf_1701 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
DNA_ligase_ZBD
HHH_3
HHH
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
ACD83755
UniProt:
B3DWU2
LinkDB
All DBs
Position
1588568..1590637
Genome browser
AA seq
689 aa
AA seq
DB search
MIESYLAFIFLNKVNKKKAPSLDSLGYEEIKKRHDELVKLIRKYDYAYYVEAHPLVSDQE
YDNLYHELETLEKLHPELITPDSPTQRIGETPLSGFSQVTHEIPMLSLENTYSKEELFAF
LERIKRALPGKKISFTVEPKIDGVSISAVYKNGLFSLGATRGNGTVGDDITQNLKTIRSL
PLRLETPDPPEYLEVRGEAYMSPKDFERLNAQREKEGKVLFANPRNATAGSLKQLDPRVV
AERPLAVVFYGAGKLVGMKCKTQEEWLNFLKKIGLPIPIVFWVCSNENEVYEAIGKLNEC
RNQLPYPTDGAAVKVNEWEYYSLLGYTAKAPRWAFAYKYGAERAKTRLNNVIFQVGRSGT
ITPVAEMDPVFLSGTTVSRATLHNFDQVKRLDVKIGDVVYLEKAGEVIPEVVGVDLNQRR
GTEKEIVPPEFCPSCGEKLSWEGIFLRCENENCPAQLKERILHFAQRNAMDIQGLGESLV
DQLVDKGIVKDVADIYDLDEETLVNLDRMGKKSAQNLLKAIEESKKKDLSRLIFGLGIPH
IGQKASEDLARYFGTMDKLSHATEEELLNLPFIGEIMARSIVNYFRKEANRRRLEKLRKK
GLNFVSTLSQASSGTLSGKTFVITGTLSEPRESIAQKIISKGGRVSNSLSRKTSYLVVGS
DPGSKLQEAKKLGIPLINEQELLEMLHGG
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
ttgattgaatcctatttggcgtttatttttttgaataaagtgaacaaaaaaaaggctcct
tctttggactccctcggttacgaggaaatcaaaaagaggcatgatgagctcgtcaagctc
attcgaaaatacgactacgcctattatgtcgaagcccatcccctggtttccgaccaagaa
tacgataatctttaccacgagctagaaacccttgaaaaactccatcccgagctgatcact
cccgactcccccacccagaggataggtgagactcccctgagcggtttctctcaagtcacc
cacgagattcccatgctcagtttagaaaacacctattccaaggaagaactctttgctttt
ctagaaagaataaaaagggcccttcccgggaaaaaaatcagctttaccgttgaacccaag
atcgacggcgtatccattagcgccgtctacaaaaacgggttgttcagtcttggggctacc
cggggcaacgggaccgtgggggacgatattacccaaaacttaaaaaccatccgcagcctt
cctttgaggctcgaaacgcccgatcctcccgaatacttagaagtaagaggagaagcctac
atgtcccctaaagattttgaacggctcaatgcccagagggaaaaagagggcaaagtcctc
tttgccaatccaaggaatgcgacggccggttctctcaagcagctcgatccacgagtagtg
gccgaaagacccttagccgttgtcttctacggagcgggaaaactcgtgggcatgaaatgc
aaaacccaagaagaatggttaaattttcttaaaaaaataggccttcccatccccatcgtg
ttctgggtttgtagcaacgaaaacgaggtctacgaagcgataggcaaactcaacgagtgt
cgaaaccagcttccttatcctaccgatggagcagccgtaaaagtcaacgagtgggagtat
tattctcttcttggatacacggcgaaagccccccggtgggcatttgcgtacaagtacggg
gctgaaagggcaaaaacacggctaaacaacgttattttccaggtaggtcggagtggaacc
atcacacccgtggccgaaatggatcccgttttcctttcgggaacaacggttagccgggca
acgctccataatttcgaccaggttaaaagactcgacgtcaagatcggcgatgtcgtctac
ctggaaaaggccggggaagttatccccgaagtggtcggggtcgatctgaaccagcgtcgc
gggaccgaaaaggagatcgttccccccgagttttgtcccagttgtggggaaaaactttcc
tgggaagggatattccttcggtgtgagaatgagaattgtcctgcccaattgaaggaaaga
attttacattttgcccaacgcaacgcgatggatatccaaggactgggagagtccctggtt
gaccaactggttgacaagggaatagtcaaagacgttgccgatatctatgacctggacgaa
gaaacccttgtcaacttggatcgaatggggaagaaatcagcccagaatcttctcaaagcg
atcgaagaaagcaagaagaaagatctctctcgattaatctttggcctggggataccccac
ataggtcaaaaagcctccgaggatctggcccgttattttgggacaatggacaaactgtcc
catgccaccgaagaagaactactcaacctcccttttattggcgagatcatggccaggtcc
atagtcaactactttcggaaagaagcaaaccgcaggcggctcgaaaaactgcgcaaaaaa
gggctaaactttgtctcaaccctctcccaagcctcttcgggcactctctccggcaaaacc
tttgtcattacggggactctttctgaaccccgcgaatccatagcccaaaaaatcatctcc
aaaggaggaagggtaagcaactctctttcaagaaaaacaagctatcttgttgtcggttca
gatcccggatcaaaattacaggaagccaagaaactgggcatcccccttatcaatgaacag
gaacttttagagatgttgcatggaggataa
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