Mangifera indica (mango): 123194825
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Entry
123194825 CDS
T07684
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123194825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
minc03041
]
123194825
Spliceosome [BR:
minc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
123194825
Complex C
U5 SnRNP specific factors
123194825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
Roc
EF-G_D2
Septin
Ras
SOI
Motif
Other DBs
NCBI-GeneID:
123194825
NCBI-ProteinID:
XP_044464193
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All DBs
Position
13:739805..746246
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AA seq
985 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDQESDAEEEDEDLPDKAAEDEPMSDGEGAANGWITAANDVD
MDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVRNIKFEVGVKDSSTY
VSTQFLIGLMSNPALVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHMRYTDTR
IDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDTPGHANFSDEMTAALRLADGAVLIVDA
ADGVLVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPKDAYHKLRHTIEVINNHISA
ASTTAGNVQVIDPAAGNVCFASASAGWSFTLQSFAKLYVKLHGVPFDADKFAARLWGDLY
YHPDTRNFKKKPPVNGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNAAY
KLNVRPLLRLACSSVFGAASGFTDMLVKHIPSAQDAAARKVDHIYTGPKNSMIHKAMVDC
DASGPLMVNVTKLYPKSDCSVFDAFGRVYSGTIQTGQTVRVLGEGYSPDDEEDMTVKEVT
KLWIYQARDRIPISSAPPGSWVLIEGVDASIMKTATLCNMDYDEDVYIFRPLQFNTLPVV
KTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELY
SEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSVD
WSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKNLLGAVKDSIVQ
GFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLM
EPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLR
YHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDVS
INKFFDEAMVVELAQQAADLHQQMI
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagtttatatgatgagtttggaaactacattggacctgaaatagagtccgac
caagagagtgatgcagaggaagaagatgaagaccttccagacaaggctgctgaagatgag
cctatgtcagatggtgagggtgcagcaaatgggtggattactgctgctaatgatgttgat
atggataaccagattgtccttgctgaggataagaaatactacccaactgcagaagaggtt
tacggtgaagatgttgagactttggtcatggatgaggatgagcagccccttgaacaaccc
atcatcaaacctgttagaaatatcaagtttgaggttggggtgaaagattcttcaacttat
gtatcaacccagtttcttattggtctcatgtcaaaccctgctttggtacggaatgttgca
cttgtggggcacttgcatcatgggaagacagtttttatggatatgttgattgaacaaaca
caccatatgtctacatttgatccaaatagtgagaagcacatgagatacacggatacgagg
attgatgagcaagaaagaagaatatcaatcaaggcagttccaatgtcacttgttttagag
gatagcaattcaaaatcatacctttgtaacatcatggacacccctggtcatgccaatttc
tctgatgaaatgactgctgctctcaggcttgcagatggtgctgttttaattgttgatgct
gctgatggggttctggtgaacacagagagggctatacgccatgcaatccaagagcgcctg
cccattgttgttgtcatcaataaggttgacaggttgataacagaattgaagctgcctccc
aaggatgcttaccataaattgaggcatacaattgaagtcattaataaccacatttctgct
gcttcaaccactgcaggaaatgttcaagttatagatccagctgctggaaatgtttgtttt
gcaagtgccagtgcaggatggtccttcaccttgcagtcatttgcaaaattatatgtcaaa
ctccatggggtcccatttgatgctgataagttcgcagctcgtctttggggggacttgtac
tatcatccagacactaggaattttaagaagaaaccccctgtgaatggaggagaaagatcg
tttgtccaatttgttcttgaacccctctacaaaatatatagccaagtgattggagaacac
aagaagagtgtggaagcaactcttgcagaacttggtgtaactcttagcaatgcagcttac
aaattgaatgttaggcctctgctcagactggcttgtagctctgtttttggtgcagcatca
ggctttactgatatgctggttaagcatataccttctgcccaagatgctgcagcaaggaag
gtagaccatatatatacaggacccaaaaactccatgattcacaaggccatggtagattgt
gatgcttcaggcccccttatggtcaatgtgaccaagctgtatcccaagtctgattgcagt
gtctttgatgcttttggaagggtctacagtggtacaattcagacagggcagactgtacgt
gtgctgggagaaggctattccccagatgatgaggaggacatgactgtaaaagaagtaaca
aaattatggatttatcaagctcgagataggatacccataagcagtgcacctccaggatct
tgggttcttattgaaggtgttgatgcatcaattatgaaaactgccactctatgtaatatg
gattatgatgaagatgtgtacattttccggccactacaattcaatacccttcctgtagta
aaaacagctacagaacccctaaatcctagtgaattgcctaaaatggtggaaggtcttagg
aaaattagcaaaagctatcctctagccataactaaagttgaggagtctggggagcatact
attttaggtacgggagagttgtacttggactcaataatgaaagatctaagagagctttat
tctgaagttgaagtcaaggtggcagatccagttgtctcattctgtgaaacagtagtagag
tcttcttcaatgaaatgttttgctgaaacacccaacaagaaaaataaaatcaccatgatt
gcagagccactggagagaggtcttgcagaggacattgagaatggtgttgtaagtgttgat
tggagtcggaagactcttggtgatttcttcaaaacaaaatatgactgggatttgctggca
gctcgatccatatgggcatttggccctgataagcagggacctaatattttattagatgat
actcttccaacagaagttgacaagaatttgctgggtgccgtcaaggattccattgttcaa
ggatttcagtggggtgctcgagaaggacccctctgtgatgagcccatcagaaatgtcaag
tttaaaatagttgatgcaaggattgcacctgaacctctgcatcgaggatctgggcagatt
attcccacagctcgtcgtgtggcctattcagctttccttatggctaccccacgactgatg
gaaccagtgtattatgtggagatacaaactccaattgattgtgtctctgcaatctacacg
gtgttatctcgcaggcgtgggcatgttacagctgatgttcctcaaccagggaccccagct
tatattgttaaggcatttttacctgtgattgaatcatttggctttgagacggatttgagg
taccatactcaagggcaagcattttgcctctcagtctttgatcactgggctatagttcct
ggagatcccctcgacaagagcatagttttgcggccacttgaacctgccccaatccagcac
cttgctcgtgaatttatggtcaagacaaggcgtagaaagggtatgagtgaagacgtgagc
atcaacaagttctttgatgaagccatggtggtagagcttgctcaacaggcagctgatctt
caccagcaaatgatatga
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