Mangifera indica (mango): 123201387
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Entry
123201387 CDS
T07684
Name
(RefSeq) 5'-3' exoribonuclease 4-like
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
minc
Mangifera indica (mango)
Pathway
minc04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
123201387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123201387
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
123201387
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
123201387
NCBI-ProteinID:
XP_044472812
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All DBs
Position
2:20630442..20639664
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AA seq
952 aa
AA seq
DB search
MGVPAFYRWLADRYPRSIADVVEEEPVVDGSRVVVPVDVSKPNPNGIEFDNMYLDMNGII
HPCFHPDGKPAPASYDDVFKSIFDYIDHIFSLVRPRKLLYMAIDGVAPRAKMNQQRSRRF
RAAKDASEAEAEEERLRKEFEEAGKILTPKERPETSDSNVITPGTRFMAVLSVALQYYIQ
SRLNHNPGWRFTKVILSDANVPGEGEHKIMSYIRFQRNLPGFDPNTRHCLYGLDADLIML
SLATHEVHFSILREVITFPGQQEKCFHCGQAGHLAAECHGKPGDNAANGNGVDDTPIHKK
KYQFLNIWVLREYLQYDLDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGA
INLLMHVYRREFTAIGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAMEYNES
LKARRESAEEPLAPAEDKVKLGEPGYKDRYYAEKFDLSNPQEIGQIKRDVVWKYVEGLCW
VCRYYYQGVTSWQWFYPYHYAPFASDLKDLSDYEITLFPGEPFKPFDQLMGTLPAASSSA
LPEKYRNLMTDPSSPIYKFYPSDFEIDMSGKRFAWQGVVKLPFIDEKKLLTQTKKLEASL
TEEEQFRNSVMHDLLYVSADHPLSRQIYSYYQHNYQLPQHERCYWMIDTNASGGMNGYIW
LYERNVLCSFVPSPVRGLPHIECNQVLNISYHNPAKHKHIPEPPEGVIMPDKILTDIDIK
PFPTLWHEDNSRRQQGRDRPHLPGAMAGPMLGEAAHRLVKNTLNYKPNGSGLIEQPVYCN
IPYAVPRPRPAGPSGNERVSGDDPNSNCGYYYYMQGIVNNSRSPNPSNGVQGNRHNPSNG
VQGNRNNSRMHDRYQSQEQYGDMRTGMSDLRIAESVRSRPPAGMQYRMPNPAYSGNSNQQ
FVQNMNPLPSPPTNWINKLLGGNSRMLTNGIYEKQPVKMVYQAKTEDIMKQQ
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttccagcgttttaccggtggttggcagatcggtatccgcggtcgattgctgac
gtggtggaggaggaaccggtggtggacggtagcagagttgttgtccctgttgacgtgtcg
aaacctaaccctaatggcatagaatttgataatatgtacttggatatgaacgggattatt
catccttgttttcatcccgatggcaagcctgcacctgcctcttatgatgatgtatttaaa
tctatattcgattacattgaccatatattctcattggttcgtcctagaaagcttctctat
atggcaatcgatggagtggcaccgagagctaaaatgaatcagcagcgttctcggcgcttc
agagctgcaaaggatgcctctgaggctgaagctgaagaagaaagattaaggaaagaattt
gaggaagctgggaaaatcttgactcctaaagaaaggcctgaaacttctgattcaaacgtc
atcactcctggcacacgatttatggccgtgctctcagtagcacttcagtactatatacaa
tctaggttgaaccacaacccaggctggcggtttacaaaggttatactttctgatgcaaat
gttcctggtgaaggagagcacaaaatcatgtcttacattcggtttcagcggaaccttcct
ggttttgatccaaatactcggcattgtctttatggcttagatgcagatttgattatgttg
tctttagccacacatgaggttcacttttcaatattaagagaggtgattacttttccaggg
caacaggaaaaatgttttcactgtggtcaagctggtcatttggcagctgagtgtcatggt
aaaccaggtgataatgctgcaaatgggaatggggtggatgatactccaattcacaagaag
aagtatcagttcctaaacatttgggtgttgcgagaatatttgcaatatgatttggacata
cctaatccaccatttccaataaactttgagcgaatagtggatgattttgtgtttctatgt
ttctttgttggcaatgactttctgccacatatgccaacattggaaatcagagagggtgct
ataaatttactgatgcatgtttatagaagggagttcactgccattggtggttatcttaca
gatgctggtgaggttttgttagacagagtagagaaattcatccagtctgttgctgtgtat
gaagatcaaatctttcagaagaggactcgtatacaacaggctatggagtataatgagagt
cttaaagcaagaagagagtctgctgaagagccactggcaccagctgaggacaaggttaaa
ttgggggagcctgggtataaagataggtattatgccgagaagtttgatttgtcaaatcca
caggagattggtcaaattaagagagatgtggtttggaagtatgtggaaggtttatgttgg
gtttgccgctattactaccaaggtgtcacctcttggcaatggttttatccataccattat
gctccatttgcttcagatcttaaagatttgtccgactatgaaataactctgtttccagga
gaaccttttaagccttttgatcagcttatgggaaccctgccagctgcaagttccagtgct
ttgccagaaaaatacagaaatttgatgactgatccttcatcacctatctataaattctat
ccttctgattttgagattgacatgagcggtaaacgctttgcatggcagggtgttgtgaag
ttgccatttattgatgagaagaagttgcttactcaaacaaagaagcttgaagcgtcttta
acggaagaagaacagtttcgaaatagtgtgatgcatgatttattgtatgttagtgctgat
catcctctgtctcgacaaatttattcatactatcagcataactatcagttacctcaacat
gaaagatgttattggatgattgatacaaatgccagtggtggaatgaatggatacatttgg
ttgtatgagaggaatgtactatgtagtttcgtcccttcacctgtcaggggattaccacac
atagagtgtaaccaagttttaaacatttcttatcataatcctgcaaagcataaacacatc
ccagaacctcctgaaggtgtaatcatgcctgataagatcttaactgatatagacattaaa
ccatttcctactctgtggcatgaagataatagccggcgtcaacaaggcagagacaggcca
catttacctggagcaatggcaggccctatgttgggagaggcagctcatcgtcttgttaag
aacacacttaactacaaacctaatggttctgggttaattgagcaaccggtgtactgtaat
atcccatatgcagtacctagacctagaccagctggaccctctggaaatgagagggtttct
ggtgatgacccaaattctaattgtggatattactattatatgcaaggcatagtaaataac
tctagatctcccaatccatcaaatggtgtacaaggaaacagacacaatccatcaaatggt
gtacaaggcaaccgaaacaactccaggatgcacgacagatatcaatcccaagaacagtat
ggtgatatgaggactggtatgtctgatttgagaatagcagaaagtgtcagaagtaggcct
cctgcagggatgcaatacagaatgcctaatccagcatactctgggaattcaaaccagcag
tttgtgcagaacatgaatccacttccatctccacccacaaactggattaataaactattg
ggtggcaacagtagaatgttaactaatggaatatatgagaagcagccagtgaagatggtt
tatcaggccaagacagaagatattatgaagcaacagtga
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