Mangifera indica (mango): 123202670
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Entry
123202670 CDS
T07684
Name
(RefSeq) sm-like protein LSM3A
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123202670
09123 Folding, sorting and degradation
03018 RNA degradation
123202670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123202670
03041 Spliceosome [BR:
minc03041
]
123202670
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123202670
mRNA degradation factors
5'-3' decay
Lsm complex
123202670
Spliceosome [BR:
minc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
123202670
Complex C
U2 snRNP components
123202670
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
Motif
Other DBs
NCBI-GeneID:
123202670
NCBI-ProteinID:
XP_044474613
LinkDB
All DBs
Position
19:6572961..6575076
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AA seq
97 aa
AA seq
DB search
MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE
IDDETYEEIVRTTKRNVPFLFVRGDGVILVSPPLRTA
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgaagaagagagcgccgttaaggagccgttggatctgatcagactcagtctt
gacgagcgtatttacgtgaagctccgatccgaccgtgaactccgtggcaaactccatgct
tatgatcagcatttaaatatgatacttggggatgttgaagaagttgttactaccgttgag
attgatgatgaaacttatgaagagatcgttcggaccacgaagcgcaatgttccatttctc
tttgtaagaggtgatggagtcatactggtctctcctccattaaggacagcttga
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