KEGG   Mangifera indica (mango): 123211451
Entry
123211451         CDS       T07684                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
minc  Mangifera indica (mango)
Pathway
minc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:minc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    123211451
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:minc03021]
    123211451
Enzymes [BR:minc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     123211451
Transcription machinery [BR:minc03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     123211451
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 123211451
NCBI-ProteinID: XP_044486128
LinkDB
Position
3:complement(10802646..10819286)
AA seq 1489 aa
MDNGCEELELPSGVINGITIGISTESDKEKLSVLAIDAVGEVTDPRLGFPNPTSQCSTCG
AKDLKHCEGHFGLIKFPYTIQHPYFLSEITKILNRICPGCKSIRKDLSKKGSSSLSKEQQ
PEGCKYCFTNNKHRKKENSVGWYPRMKFKVSSKNLSGQTAIIVEIDDKLPKKFQKRLADD
YWNFIPKKDSEQEDSCLKLGRMVLSHAQVRYLLKNVDQSFIEKFITWKDALFLTCFPITP
NSHRVKEVLHGLSNGKQLTFDERTRAYRKLVDFRGKSNELSSLVHHCLKISKLHLEKATG
NDVVDDQRKKNIDVSYSSGLRWIKDVVLGKRNDRCFRMVVTGDPNIKPGEIGIPCHVAER
LQISEHLNKYNWERLKACSSLCLLEKGALVVRRNGDLTSLHRINALKLGDIINRPLSDGD
VVLVNRPPSTHPHSMIALSVKVLPVSSVVTINPLCCSPFHGDFDGDCLHGYIPESVDSRV
ELTELIALDRQLTNQQSGRNLLSFCQDSLIAAYLVLEDGVFLSCLQMQQLQMFCPHRLLS
PAIAKTPSLNSGVWTGKQLFSMLLHPNFGYVFSTRGVEIKDGEIISSEGSSWLHDNDGNI
FQSLINHYPDKFLDILYVAQEVLCDWLSVRGLSVSLLDLYLSSDPCTHSVMMDEIFYGLQ
EAEDTCNFKQLMLDSCKDFLINSEDSESVLGFKLERVCYERQRSAARSQVSVDAFKQVFW
DIQNLAYKYASKDNSLLAMYKAGSKGSLLKLVQQSMCLGLQYSLAPLSFRFPHDLSCVGW
NCSKIDDATECAKSYIPYAVVKSSFLKGLNPLECFAHSVTNRDISFSDNADLPGTLTRRL
MFFMRDLCTAYDGTVRNAYGNQIVQFSYNIDADTSTPSNEIGGQPVGSQAACAISEVAYS
ALDQPISLLETSPLLNLKNVLECGSKKIYADQTMSLYLSKKLGKWRHGFEHGALEVKNHL
ECLLFSDIISTVLIIYSPQTCSKPHFSSWICHFHLCKEIVKRRRLKVHSIIDALYKHCNS
ARTPKVSLPNLHISCTDCSSVNTQKDDGTICISVMVVENSKRSYIELEKIQSIMIPFLLK
AVVKGCMEIKKVDILWKDRQKASKTHGSSFGELYLRVSMSRGSGKTNLWSVLVNGCLQIM
DMIDWTRSHPDNIRSFCSVYGIGAGIKFFLNNLESAISDAGKTVLPQHLLLAANTLSATG
EFVGLNAKGIAQQRELASVASPFMHASFSNPGACFIKAAKAGTTDNLQGSIDALAWGKVP
SIGTSGHFDVIYSGEGHKLAKPVDVYNLLGTSLSSKQNIEFELHNARGHMSDNCGAQFAH
IGAAASKEFKILETILRHFFTVNDVHKLSRTVKSILHKYPIDHSLNEMDQNILMKALYFH
PRREEKIGNGAKEIKVTCHPEYKDSRCFSLVRKDGTTEDFSYHKCIHGALQMIAPGKAKS
YQTKWLHNYTAESSSLFMQLTRNLLMNFGSLDSGNKPSEKVYEIAVHFL
NT seq 4470 nt   +upstreamnt  +downstreamnt
atggacaatgggtgtgaagagctggaactgccatccggtgtcattaatgggataactatt
ggaatttcaactgagagtgataaagaaaagttgtctgtactagcaattgatgctgttggt
gaggtcaccgatcctaggttagggttcccaaatccgacttctcagtgttccacatgtggt
gcaaaggatttaaaacactgtgaaggccattttgggttaattaagtttccctatactatc
caacacccatatttcttatcggaaattacgaagatattaaatagaatatgcccaggatgt
aaatctatcaggaaagacttatccaaaaaggggagtagttctttatctaaagaacaacaa
ccagaaggttgcaaatactgtttcacaaataataaacacagaaaaaaggaaaattctgtt
ggttggtacccaagaatgaaatttaaagtttcatctaaaaatctttctggtcaaactgct
attatagtcgaaatagatgacaagttgccaaagaagttccaaaagaggttggctgatgat
tattggaattttattccaaagaaggattccgaacaagaagacagttgtctgaaactaggc
agaatggttctatcacatgcccaagttcgctatttgttgaaaaatgttgatcaaagtttc
attgaaaagttcattacatggaaagatgcacttttccttacttgtttccctataacacca
aatagtcatcgtgtgaaagaagttttacatgggttatcaaatggaaagcaattgacgttt
gatgagcggacaagggcttacagaaaactggttgatttcagaggcaaatcaaatgaattg
agttctcttgttcatcactgcctaaaaatttcaaagctacacttagaaaaggctactggt
aatgatgttgttgatgaccagagaaagaagaatattgatgtttcctacagctctggttta
aggtggatcaaagatgttgttcttgggaagcgaaatgatcgttgttttcgcatggttgtc
actggtgacccaaacatcaagcctggtgaaattggaataccgtgccatgttgcagagagg
ttacagatttcagagcatttgaacaagtataattgggaaagactgaaagcttgctccagc
ttatgtcttcttgagaagggggcgcttgtagttcgtagaaatggtgaccttacttctctt
catcgtattaatgcactcaaactaggagatatcattaataggcccttaagtgatggagat
gtcgtgttggtgaataggccaccctccacacacccacactccatgattgctttgtctgtg
aaggttcttcctgttagctcagtggtcactataaatcccctttgttgctcccctttccat
ggggactttgatggtgattgccttcatggctatattcctgaatcagttgattctcgagtt
gagcttactgagcttattgctttagataggcagttaactaatcagcagagcggtaggaac
ctactatcattttgccaggatagtttgattgctgcttatttggtcctggaagatggtgtt
ttcttgagctgtttgcaaatgcaacagctgcaaatgttttgtccacatcgattgttgtcg
ccagcaatcgctaaaactccttcacttaatagcggtgtttggactggcaaacagttattc
agcatgcttcttcatccaaattttgggtatgtgttttccacaagaggtgttgagatcaaa
gatggagagattatatcttctgaagggtcttcttggttgcatgacaatgatggaaacatt
tttcaaagtcttataaaccactatccggataaatttcttgacatcctatatgttgctcag
gaagttctttgtgattggttgtctgtgaggggtttgagtgtttcactcttggacttgtac
ttgtcttctgacccatgcacccacagcgtaatgatggatgaaattttttatggtttacag
gaagctgaggatacttgcaattttaaacaactgatgttggattcctgtaaagacttcctt
attaattctgaagatagtgaaagtgttttgggttttaaattggagcgggtatgttatgag
aggcagagatcagctgcccgtagtcaagtttctgttgatgcttttaagcaagttttctgg
gatattcaaaatttagcatacaagtatgcaagtaaggataactcattgctagctatgtat
aaggcaggaagtaagggtagtttgttgaagcttgtccaacagagcatgtgtcttgggctt
cagtattcactggctccattgtcatttagatttccccatgatctctcttgtgttggttgg
aactgttcaaagattgatgatgctactgaatgtgccaaatcttacataccatacgctgtg
gtcaaaagttcttttctgaaaggcttgaatcctttggaatgctttgctcattcagttaca
aatcgggatatttcattcagtgataacgctgatcttcctgggactttgacccgcaggctt
atgttcttcatgcgcgatttatgtactgcatatgatggaacagtgagaaatgcctatggc
aatcaaattgttcaattttcttataatattgatgcggacacatcaactccatcaaatgag
ataggtggtcaacctgtcggttctcaagctgcttgtgcaatttctgaagttgcttacagt
gctttagatcaaccaattagtctacttgaaacttcaccgctcctaaatctaaagaatgta
ctggaatgtggttcgaagaaaatctatgctgatcagaccatgtcactatatttatcaaaa
aaactggggaaatggaggcacggttttgaacatggagccttagaagtcaagaaccatttg
gagtgcctcctcttttcagatattatttcaacggtcttgataatctactcccctcaaact
tgcagcaagccacatttcagttcttggatttgtcattttcatttgtgcaaggaaattgta
aagaggagaagactgaaagtacattctattattgatgccctttataagcattgtaactct
gccagaacacccaaagtcagtcttcccaatttgcacatttcttgcacggactgttcttca
gttaacactcagaaggatgatggtacaatatgcatctctgttatggtagttgaaaactcc
aagagatcttacatagaattggagaaaattcaaagcatcatgatacctttccttctgaaa
gcagttgtaaaaggatgcatggagataaagaaagtggatatcttatggaaagatagacaa
aaagcatcaaaaacccatggcagttcttttggtgaactctacttgagggtctctatgtct
agaggcagcggtaaaacaaatttatggagtgttcttgtgaatggctgcctccagattatg
gatatgattgattggacacgcagtcatccagataatattcgtagtttttgttccgtctat
ggaattggtgctgggataaaattttttctcaataatttggagtctgcaatatctgacgct
ggcaagactgttcttcctcaacatttgcttcttgctgcaaatactctgtcagccacggga
gagtttgttggcttgaatgcaaaaggcattgcacagcaaagagaacttgcatctgtcgct
tcaccctttatgcatgcaagcttttctaatcctggtgcttgcttcattaaagctgcaaag
gcaggaaccacagataatcttcagggcagtatagatgcattagcgtggggaaaagttcct
tcaattggcaccagtggacattttgatgttatatattctggggagggacataagcttgcc
aagcctgttgatgtctataatctcttgggtacatcactcagttcaaagcagaatatagag
tttgaattacacaatgctcggggccatatgtccgacaactgcggtgctcagtttgcacat
attggtgctgcagcatccaaagaatttaaaatattggaaactattttgagacatttcttt
acagtgaatgatgtccataaactatctcgtacagtgaagagcatactgcacaagtatcca
attgatcatagtttgaatgaaatggaccaaaatatcttgatgaaggctttatattttcat
cctcgaagagaagaaaagattggaaatggggccaaggaaataaaggttacatgtcaccct
gaatataaagattcacggtgcttttcattggtaagaaaagatggcacgaccgaggatttt
tcttatcacaagtgcattcatggtgctcttcagatgattgctcctgggaaagctaagagc
tatcaaacaaaatggttacataattatactgcagaatccagctccctgttcatgcagctg
actcgcaatttgttgatgaattttggtagtcttgacagtgggaataaaccatctgagaag
gtttatgaaattgctgtacattttctctag

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