Mangifera indica (mango): 123217037
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Entry
123217037 CDS
T07684
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123217037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123217037
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123217037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
AAA
AAA_23
Arf
SMC_N
ORC-CDC6-like
nSTAND3
AAA_30
AAA_25
AAA_7
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
123217037
NCBI-ProteinID:
XP_044493713
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Position
1:complement(1974181..1976254)
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AA seq
330 aa
AA seq
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MKMAVIENSKPTVEINGLKFTYPGIDGHPPAGSTPLIDDFSLTLNAGDRCLLVGSNGAGK
TTILKILGGKHMVEPHMVRVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMD
VSAEKMIFGVAGTDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLRPFKVLLLD
EITVDLDVLARADLLKFLKKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM
NQVKEISKLSLMRTVESWLRKERDEERKRKNERKASGLAEFEKQVEGSCVTGDPARASVR
ALNNGWAAGRLHSTVAGEENFFLSSNRVLR
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgaagatggcagtgatagagaattcaaaaccaacggtggagatcaacggactgaagttc
acatatccaggaatcgacggtcacccaccggcgggctccactccattgattgacgatttc
tcacttactctcaatgctggagatcgctgccttctcgtcggatcgaatggcgccggaaaa
acgacgatattgaagatccttggaggaaaacacatggtagagccgcacatggtgagagta
cttggcaggtctgctttccacgacaccgctttgacctcctctggcgatctcagctacctt
ggaggagagtggaggagggaggttgcttttgcagggtttgaggttccaatacaaatggat
gtttcggcagagaaaatgatatttggagttgcaggtactgatcctcaaagaagagctgaa
ctaatcaaggtattagatattgatttgtcatggagaatgcataaggtatctgatggtcag
agaagacgtgttcaaatttgtatgggtctcctcaggcctttcaaggttcttcttctagat
gagatcacagttgatcttgatgtactagcgagggctgatctcctcaagtttctgaagaag
gaatgtgaagagcgtggtgctacaattatctatgctacccatatatttgatggattggag
aactggccatctcatattgtgtatgtggctcatggaaagttgcaattggcaatgccaatg
aatcaagttaaggagattagcaagctatcactgatgagaacagtggagagttggctgagg
aaggaaagagatgaagagaggaagagaaaaaacgaaagaaaggcaagtggtcttgctgaa
ttcgaaaaacaagttgagggaagctgtgtaacaggggatccagctcgtgcttctgttcga
gcactgaacaacggttgggctgcaggaaggctgcattccacagttgctggcgaagagaac
ttcttcttaagctcaaacagagttctgaggtag
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