Mangifera indica (mango): 123217727
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Entry
123217727 CDS
T07684
Name
(RefSeq) ABC transporter I family member 19-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123217727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123217727
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123217727
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
ORC-CDC6-like
nSTAND3
AAA_15
AAA_28
AAA_23
AAA_5
AAA
SMC_N
NACHT
AAA_22
AAA_30
AAA_25
SRP54
AAA_18
Zeta_toxin
PduV-EutP
AAA_33
Arf
AAA_24
Motif
Other DBs
NCBI-GeneID:
123217727
NCBI-ProteinID:
XP_044494767
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Position
5:14134797..14137850
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AA seq
294 aa
AA seq
DB search
MAEKDKESEKSNSSSVRVCGMQFSYDGQTPLFYDFNLDISPGSRCLLVGANGSGKTTLLK
ILAGKHMVGGRDVVRVLNRSAFHDTQLVCSGDLAYLGGSWSKTVGSAGEIPLQGDFSAEH
MIFGVEGADPVRRERLIDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPFQVLLLDEVTVD
LDVVARLDLLDFFKEECDQRGATIVYATHIFDGLEPWATHLAYIQDGELRRAEKLTEVDE
LKSSANLLSVVESWLRTETKLEKKRNITRPAHFQNSSSIGSSPFMSSRHMAYYR
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaaggacaaagagagtgagaaatcaaacagcagcagtgttcgagtatgtggg
atgcaattttcttacgacgggcagactcctctcttctacgatttcaatctcgatatctca
ccgggatctcgctgtcttctcgttggtgccaatggatctgggaagacgacgttgttgaaa
attttggccggaaagcatatggtgggaggaagagacgttgtccgagtgctgaatcgatca
gcctttcatgatacgcaacttgtttgtagtggtgacttggcatatttgggaggctcttgg
agtaaaactgttggctctgctggagagattccactccagggagacttctctgcagaacat
atgatatttggagtcgaaggtgctgatcctgttaggagagagagattgattgatctgctg
gatattgacctgcagtggcgaatgcataaggtatctgatgggcagcggcgcagagtccaa
atttgcatgggtcttcttcacccttttcaggttcttttgctggatgaggttacagttgac
ctagatgttgttgctaggcttgatttactcgacttttttaaggaagaatgtgaccagaga
ggagctacaattgtatatgcaacccatatctttgacggattggagccatgggctactcat
ctggcatacatccaagatggtgagttgagaagggcagagaagttaacagaagttgatgag
ttgaaaagctcggcaaaccttctctcagttgttgagtcctggcttcgtactgagaccaaa
cttgaaaaaaagagaaacatcacccgtccagcacattttcagaactcctcttccattggt
tcctctccttttatgtcatccaggcacatggcatactaccgttga
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