Mangifera indica (mango): 123220819
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Entry
123220819 CDS
T07684
Name
(RefSeq) 5'-3' exoribonuclease 4-like
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
minc
Mangifera indica (mango)
Pathway
minc04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
123220819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123220819
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
123220819
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
123220819
NCBI-ProteinID:
XP_044499335
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All DBs
Position
7:complement(15417698..15426834)
Genome browser
AA seq
947 aa
AA seq
DB search
MGVPAFYRWLADRYPRSIVDVVEEEPKVDANGVVSPVDVSNPNPNGIEFDNLYLDMNGII
HHCFHPEGKPAPASYDDVFKSIFDYIDHIFLLVRPRKLLHMAIDGVAPRAKMNQQRSRRF
RAAKDAAEAEFEEERSRKDFEEAGKILAPKEKPETSDSNVITPGTQFMAILSIALQYYIQ
SRLNHNPGWRFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTQHCLYGLDADLIML
SLATHEVHFSILREMITLPGQQEKCFCCGQAGHLAAECRGKPDDNALDGNMVDDTPIHKK
KYQFLNIWVLREYLQYDLDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHSPTLEIREGA
INLLMHVYRREFTAMGGYLTDSGEVLLNRVEKFIQSVAVYEDQIFHKRTRIQQAMEHKES
LKARRESAEEPQAPAEDRVKLGEPEYKDRYYAEKFDVSNPLEIDQIKKDVVRKYMEGLCW
VCRYYYQGVASWKWFYPYHYAPFASDLKDLSDYEITFFLGEPFKPFDQLMGTLPAASCSA
LPEKYRNLMIDPSSPIYKFYPSDFEIDMNGKRFAWQGVVKLPFIDEKKLLTQTKKLEASL
TEEERFRNSELHDLLYVSAGHPLSQQINLYYLQYFKLPQHERFACLINTNASGGMNGYIW
LYERNELCSFVPSPVRGLPHIECNQVLNVTYLLPAKHKHIPELPKGVIIPDKMLTDIDIK
PFATLWHEDNSLRQQGRDRPHLPGAIAGPMLEEAAQRLIKNTLNYKPNGSSGLVEQPVYH
NIPYAVSRPRPAGPSGIERGFGDYPNSNYGYPYHMRGIMSNCRSPNPSNGVQGNRDNSRM
QDRHQYQEQYGDIRTGMSHLRIEESVRSRPPAGMHYRMPNSGYSRNSNLQSVQNMNPLPS
PPTNWINKQLAGDSRKYTNGIYEKKQTKMVYQVKTAQPSPEDILKQQ
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgggggttccggcgttttatcggtggttggcagatcggtacccgaggtctattgttgac
gtggtggaggaggagccgaaggtcgacgctaacggagttgtttctcctgtggacgtgtcg
aatcccaaccctaacggcatagaatttgataatttgtacttggatatgaacgggattatt
catcattgttttcaccccgaaggcaagcccgcacctgcctcctatgatgatgtatttaaa
tctatttttgattacattgaccatatattcttgttggttcgtccaagaaagcttctccat
atggcaattgatggagtggcgccgagggctaaaatgaatcagcagcgttctcggcgcttc
agagctgcaaaggatgctgctgaggctgaatttgaagaagaaagatcaaggaaagatttt
gaggaagctggaaaaatcttggctcctaaagaaaaaccagaaacttctgattcaaatgtc
atcactcctggcacacaatttatggccatactctcaatagcgcttcagtactatatacaa
tctaggttgaaccacaatccaggctggcgttttacaaaggttatactttctgatgcaaat
gttcctggtgaaggagagcacaaaatcatgtcttacatccgattgcagcgcaaccttcct
ggttttgatccaaacactcaacattgtctgtacggcctggatgcagatctgattatgttg
tctttagccacacatgaggttcacttttcaatattaagagagatgattactttacctggg
caacaggaaaagtgtttttgctgtggtcaagctggtcatttggcagctgagtgtcgtggt
aaaccagacgataatgctttagatgggaatatggtggatgatactccaattcacaagaag
aagtatcagttcctaaacatttgggtgttgcgagaatatttgcaatatgatttggacata
cctaatccaccatttccaataaactttgagcgaatagtggatgattttgtgtttctatgt
ttctttgttgggaatgactttctcccacattcgccaacattggaaattagagagggtgct
ataaatttactaatgcatgtttatagaagggagttcactgccatgggtggttatcttaca
gattccggtgaggttttgttaaacagagtagagaaatttatccagtctgttgctgtatat
gaagatcaaatctttcataaaaggactcgtatacaacaggctatggagcataaagagagt
cttaaagcaagaagggagtctgctgaagagccacaggcaccagctgaggacagggttaaa
ttgggggagcctgagtataaagataggtattatgctgagaagtttgatgtatcaaatcca
ctggagattgatcaaattaaaaaagatgtggttcggaagtatatggaaggtttatgttgg
gtttgccgctattactaccaaggtgtcgcatcttggaaatggttttatccataccattat
gctccatttgcttcggatctcaaagatctgtctgactatgagataacattttttctggga
gaaccatttaagccatttgatcagcttatgggaaccctgccagctgctagttgcagtgct
ttgccagaaaaatacagaaatttgatgattgatccatcatcacctatctataagttctat
ccttctgattttgagattgacatgaacggtaaacgctttgcatggcagggtgttgtgaaa
ttgccttttattgatgagaagaagttgcttactcaaacaaagaagcttgaagcctcttta
acggaggaagaacggtttcgaaatagtgaattgcatgatttattgtatgttagtgctggt
catcctctgtctcaacaaattaatttatactatctgcaatactttaagttacctcaacat
gaaagatttgcttgtctgatcaatacaaatgccagtggtggaatgaatggatacatttgg
ttgtatgagaggaatgagttatgtagttttgtcccttcccctgtcaggggactgccacac
atagaatgtaaccaagttttaaacgttacttatcttcttcctgcaaagcataaacacatc
ccagaacttccaaaaggtgtgatcatacctgataagatgttaactgatatagacattaaa
ccatttgccactctatggcatgaagataacagcctgcgccaacaaggtagagacaggcca
catttacctggagcaatagctggccctatgttggaagaggcagctcagcgtcttattaag
aacacacttaactacaaacctaatggttcttctgggttagttgagcaaccggtgtaccat
aatatcccgtatgcagtctctagacctagaccggctggaccatctggaattgaaagggga
tttggtgattacccaaattctaattatggatatccctatcatatgcgaggcataatgagt
aactgtagatctcccaatccatcaaatggtgtacaaggcaacagagacaactctaggatg
caggacagacatcagtaccaagaacagtatggtgatataagaactggtatgtctcatttg
agaatagaggaaagtgtcagaagtagacctcctgcagggatgcattacagaatgcctaat
tcaggttactccaggaattcaaacctgcagtctgtgcagaacatgaacccacttccatct
ccacctaccaattggattaataaacagttggccggagatagtaggaaatatactaatgga
atatacgagaagaaacaaacgaagatggtttatcaggtgaagacagcacaaccgtcccca
gaagatatcttaaagcagcagtga
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