Mesotoga infera: MESINF_0304
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Entry
MESINF_0304 CDS
T05565
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
minf
Mesotoga infera
Pathway
minf03030
DNA replication
minf03410
Base excision repair
minf03420
Nucleotide excision repair
minf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
minf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MESINF_0304 (ligA)
03410 Base excision repair
MESINF_0304 (ligA)
03420 Nucleotide excision repair
MESINF_0304 (ligA)
03430 Mismatch repair
MESINF_0304 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
minf03032
]
MESINF_0304 (ligA)
03400 DNA repair and recombination proteins [BR:
minf03400
]
MESINF_0304 (ligA)
Enzymes [BR:
minf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MESINF_0304 (ligA)
DNA replication proteins [BR:
minf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MESINF_0304 (ligA)
DNA repair and recombination proteins [BR:
minf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MESINF_0304 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MESINF_0304 (ligA)
MMR (mismatch excision repair)
DNA ligase
MESINF_0304 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MESINF_0304 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
5_3_exonuc
HHH_8
HHH_3
UPF0758_N
AbiEi_4
Motif
Other DBs
NCBI-ProteinID:
SSC11753
UniProt:
A0A7Z7LE89
LinkDB
All DBs
Position
MESINF:complement(315725..317722)
Genome browser
AA seq
665 aa
AA seq
DB search
MQADEKTIERLRKLREEINYHSYRYFVLDDPVISDGEYDELMRELIDIEKRYPELATPDS
PSARVGLKPVESFRQVVHTHRLYSLDNTYSREEVAKFDERVREALGSESVRYACELKIDG
LSISLKYEKGVLLLGATRGDGFVGEDVTTNIRAIKSIPLRLRKSLDIEVRGEVYLPKDVF
DELNRERISEGLPVFANPRNAAAGTLRQLDPGQVLKRRLSAFFYQVVEPMNYGVRSQEEL
YEFMRELGFRVEPNHEIASCTEEIVAYWEKWTARKGGLNYAIDGVVVKVDDYLQQQELGY
TAKAPRWSMAFKFPAEQVSTVLTGVTFQVGRLGNITPVAELVPVQLAGTTVKRASMHNFD
FIRDRDIRINDTVIVEKAGEIIPQIVKSIQEKRDGKEIEIEMPSNCPVCGGDVGREKEGE
VALKCLNPLCPAKLIRRITFFSSRDAMDIEGLGERLVERLVDSGLVSDFSDLYRLTKKDI
LKLGEGVGDKMAENLLSSIEKSRKNPLHRLITALGIPGIGTKLARDLAKRFGNLEALATA
SIDELTSVTGIGEELAKSIREFFSREAVKREIDALRSQLNTLEEESGARKPLKGLKFVVT
GTLKNYSRNEIHELITSLGGEVAASVSRNTDYLIAGEKAGSKEAKAISLGIKVITESEFE
EMIDL
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagctgacgagaaaacaatagaaagattgagaaagctgagagaagagatcaattat
cattcctacagatactttgttctggacgatcccgtcatatccgacggcgaatacgacgaa
ctaatgagagaacttatagatatagaaaaacgctatccggaattggccaccccagattct
ccaagcgccagggtcggtttgaagcccgtcgaatccttccgtcaggttgtacatacgcac
agattgtactcacttgacaacacctattccagagaagaagtggcgaagttcgacgagaga
gtcagagaggctctcggtagtgaatcggttcgttatgcctgcgagctgaaaatcgatggg
ctgtcgatttcactgaagtacgaaaagggtgttctcttacttggagcaaccaggggagac
ggttttgtcggtgaggacgtaaccacgaacataagggccattaaatctataccgttgaga
ctcagaaaaagtctggacatcgaagtgcgaggtgaagtttacctcccgaaggatgttttc
gacgagctcaacagggagagaatttcagaagggcttcccgtctttgccaatcccagaaac
gccgctgccggcactttgagacagctagatccggggcaggtcttgaaacgtaggttaagc
gcctttttttaccaggtggtagaaccgatgaattacggcgttaggagtcaggaagagctc
tacgaattcatgcgtgagttgggattcagggttgagcccaaccatgagattgccagctgt
acagaggagatagttgcttactgggagaagtggaccgcccgaaagggtggtctcaactat
gcgatcgacggtgtggttgtcaaagtcgatgactatctacaacagcaggagctgggatac
acggcgaaggctcccagatggtcgatggcctttaaatttccggccgaacaggtgagcacc
gtgctcaccggagtaacttttcaggtaggtaggctgggaaatataacgccggtcgccgag
cttgtaccggttcaactggccggaacgactgtcaagagagcgagcatgcacaatttcgat
tttattagggatcgcgacataaggataaacgatacggttatcgtcgagaaggccggtgag
ataattccgcagatcgtaaaaagtatacaggaaaagagagatggtaaagaaatcgagatc
gagatgccctcgaactgtccggtatgtggtggcgatgttggacgggagaaggaaggcgaa
gtggcgttgaaatgtctcaaccctctctgtccggcgaagttgatcagacgcataaccttt
ttctcttctcgcgacgccatggatattgagggactgggagagagactcgtggaaagattg
gttgattcaggtcttgtgagtgacttttccgatctgtatagactcacgaagaaagatata
ctgaaacttggtgaaggtgtgggcgacaaaatggccgagaacttgctatcgtcgatcgaa
aagagcagaaagaatcctcttcacaggctaatcaccgccctgggcattcccgggatcgga
acgaaactggcgagggatctggcaaaacgcttcggtaatcttgaggctctggcgacggct
tctatcgatgaactgacatccgttacgggtataggagaagagctcgcgaagtctataagg
gagttcttctccagagaagccgtgaagcgtgagatcgacgctctccgctctcagttgaac
acactggaggaagagtctggagccaggaagccgcttaaagggctgaaatttgtcgtaact
ggaacactcaagaattattctagaaacgagatacacgagttaatcacttctcttggcgga
gaggtagcagcctcggtttccaggaacaccgattaccttatagcgggagaaaaggctggc
tcaaaagaagcaaaagccatatcgctcggtataaaggtgattaccgagagcgagttcgag
gagatgatcgatctttga
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