KEGG   Macadamia integrifolia (macadamia nut): 122061850
Entry
122061850         CDS       T07436                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
ming  Macadamia integrifolia (macadamia nut)
Pathway
ming03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ming00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    122061850
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ming03021]
    122061850
Enzymes [BR:ming01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     122061850
Transcription machinery [BR:ming03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     122061850
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 DUF3223 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 122061850
NCBI-ProteinID: XP_042481287
LinkDB
Position
14:complement(6756557..6804529)
AA seq 1480 aa
MDNDMFLEQLVPSGVLRAISFGVLTEAHIEKCSEKTVAAGNEVSDPRLGFPNQSSQCSTC
GAKDSKNCDGHTGIIKFPMDILHPYFISETVQILNSFCPVCRSLRQNQHIKGAYMVSSTS
TETAGQTKGCKYCAGWSKQGYPRMKFKVASKDMGTNNISIIVEVNEKFLNKFQNRNTSQI
LPMDYWDFIHKDPQQEGQFMKWNQRVLTAAQVFYLLKDIDLEFIRNFVLRPESLFLSCFP
VTPNCYRVMETTHIFSNGHQLIFDDRTKAYRGLVIDFKGQSDILGSRVCDFLNVSRLHTD
KSLSTDSASMKSGLKWMKEVVLGKRTDYVFRMTVVGDPKIALHQIGIPRDISESLLISEH
LNSQNRDKLLICCSLRLLEKGELYVRRKGDLIRLHSTIQLEMGDTVYRHLDEGDVVLINR
PPSVHQHSLIALSVRVLPINSVVSINPLCCSPLRGDFDGDCLHGYVAQSIDSRVELRELV
SLERQLVNGQNGRNLLSLSHDSLTAAHVVLNKGVFMNKFKMQQLGMSFKGKVDFLNKIET
QQVGMSCPAILKVPSPHFCVWTGKQLFSMLLPEGFDFDFPSNGVQIRGGELLSSLDESSW
LRDTDGNIFSRLVKDFGSETLDLLFTAQEALCEWISMRGFSVSLSDFYFCSDSYSRKNMI
DEIKCALKEAKQVCQVKQLMVDPTLEHFLKHGEEDHYGKYLNMEKKNHLNQKSGVLNQVL
VGAFREVFHDIQNLIYQYSSKGNSLLDMVKAGSKGSLLKLAQQGLCLGLQHPSAPLSFKF
PDRLSCYMWNCQKDYENSVHNESEVPCAVVENSFLDGLNPLECFVHSVACRDNSFGENAD
LPGTLTRKLMFYMRDLYLAYDGTVRSAYGNQLVQFSYGASKNLSVKDNDLSEVFGEHTYA
FDGFGGQPVGSLAACSISEAAYSALDQPKGTQEISPLQNLKKVLECGPRKSIVNRTISLF
LSSKLRRWNYGLEYGALEVKSHLEAVLFSDVVSTAMIVFSPPQHQRTHFSPWVCHFHICE
ESMKRRQLNIDSIKVALTRYHTAKQAKVGMLPNLHILSRNCLVADAQKENLGRLCITVAV
EIANGASVELDDVRDILIPILLGTVVKGFLEVKKVDILWNNLPKASKSLKGSSGELYLRI
SMSKSGDKAQIWSVLQDVCLPIMDLIDWERSHPDNIYDICFTHGIDSAWEYFIRSLRSAL
SDVGKTVLPEHLLLVANSLSFTGQFLGLSAPGLKKQRHLTSISSPFMLACFSSPGACFIK
AAKEGAKDDLLGTLDALAWGKKAPIGTGGHFDILYSGEGHKLDEPQDIYDILCHQLKSQG
ENIENRVSHNPKNTGLSSSQLNLFQILKGHKSICKEWDSQSLSISDDPPHKGQRSLDCIL
DSVLRNFYSADDILRMNISLKNILQEYEIDECLNERDKSMLLKALYFHPRRDEKMGCGPQ
DIKVQVAHCRSVYIYIYIFNEIKLTRRQLVFRCKLLFVEV
NT seq 4443 nt   +upstreamnt  +downstreamnt
atggataatgacatgtttctggagcagctggtgccatcaggggtattgagggccattagc
tttggtgttttgactgaagcgcacatagaaaaatgttctgagaaaactgtggctgctggc
aatgaggtttcagatccaaggttagggtttccgaatcaatcctctcagtgctccacatgt
ggtgctaaagattctaaaaactgtgatggtcatacagggataattaagttcccaatggac
atattgcatccatattttatctcagaaacagtgcaaattctcaattcattttgtccagta
tgtaggtcacttcgacaaaatcagcatatcaagggtgcctatatggtatcaagtacatct
acagaaacagctggtcaaaccaagggttgcaaatattgtgctggctggtcaaagcaaggc
tatccacgaatgaaatttaaagttgcttcaaaagatatgggcacaaataacatttcaatt
atagttgaagtaaatgagaagttcctaaacaaatttcaaaatagaaataccagtcaaata
cttcctatggattactgggattttatacacaaagatccacagcaagaaggccaattcatg
aaatggaaccaaagagtgctaacagcagcccaggtgttttatttgttgaaagacattgac
cttgagttcataaggaattttgttctaagaccagaatcactttttctttcttgttttcct
gttacgcccaactgttatcgtgtaatggaaacaacacatatattctccaatgggcatcaa
ttgatttttgatgaccgcaccaaggcttatagaggtctggtgattgacttcaaaggacag
tcagatatacttggttcacgtgtttgtgacttcttaaatgtttccagattgcacactgat
aaatcattgagcacagattccgcttcgatgaagtctggtttgaaatggatgaaagaagtt
gttcttggaaagcgaacggattatgtgttccgtatgactgttgttggtgatccaaagatt
gcactgcatcaaattggaatacctcgtgacatttcagagagtttgttaatttcggaacac
ctaaactcacagaatcgggataagttactcatctgctgtagcttacgtctccttgaaaag
ggagagctctatgttagaaggaagggtgatctaattcgcctacatagtaccattcaactt
gagatgggggacactgtatatagacatctagatgagggagatgttgttttgataaatagg
cctccatcagtgcatcagcactccctaattgctctatcagtcagggtccttccaattaat
tcagttgtttccataaatcctctctgttgttcccccctacgtggtgattttgatggagat
tgtcttcatgggtatgttgcccaatccattgactctagagttgagttaagagaacttgtc
tctctagagcggcagttagttaatggacaaaatggtcgaaatttgctctcacttagtcac
gatagtttaactgctgctcatgtggtcctgaataagggtgttttcatgaacaagtttaaa
atgcagcagcttggaatgtcattcaagggtaaggttgattttttgaacaagattgaaacg
cagcaggttggaatgtcatgtcctgctattctcaaagtaccgtcacctcacttttgtgta
tggactgggaagcagttattcagtatgctcctccctgagggctttgattttgatttccca
tcaaatggtgtccaaatcagaggaggagaacttttgtcttctttggatgaatcttcttgg
ctacgagatacagatggcaacattttctccagacttgttaaagattttgggagtgaaacc
cttgatttactgttcactgcccaggaagctctttgtgagtggatatctatgaggggattt
agtgtctctttatctgatttttacttttgctctgattcatactcccggaaaaatatgatt
gatgagatcaagtgtgccctaaaagaagcaaagcaggtttgtcaagtcaaacaattgatg
gtggatcctaccttggagcactttctcaagcatggtgaagaagaccattatggaaagtat
ctcaacatggagaagaagaatcacttaaaccagaagtctggtgtattgaatcaagtttta
gtcggtgcttttagagaagtctttcatgacattcagaacttaatctatcagtactccagc
aagggcaattcactgttggacatggtaaaggctggaagcaagggtagtcttctgaaactt
gctcagcaaggcctgtgccttggtttgcagcatccttcagctccattatctttcaaattt
cccgacaggctttcttgttatatgtggaattgtcagaaggattatgaaaattctgtacat
aatgaatctgaagtaccctgtgctgtggtggaaaattcttttcttgatggcctgaaccca
ttagaatgttttgttcattcggtagcatgtcgagataattcttttggtgagaatgccgat
cttcctggtactttgacaagaaagcttatgttttacatgcgtgatctctaccttgcttat
gatggaacagtgagaagtgcttatgggaatcaacttgttcaattctcttatggtgcttcc
aagaacttatctgttaaggataatgaccttagtgaggtgtttggtgagcatacatatgct
tttgatggatttggtggtcaacctgttggctctttggctgcttgttccatttcggaagct
gcatacagtgctttagatcaaccaaagggtacacaagaaatttctcccctgcaaaatcta
aagaaggtattggaatgtggtccaagaaaaagtattgtaaatcgaaccatatcattattt
ttgtcgagtaaactcagaagatggaattatggtcttgagtatggagccctagaagttaag
agccatctggaggcagtattgttttcagatgttgtttctactgccatgattgtcttttct
ccaccacagcatcaaaggacacacttcagtccatgggtttgccattttcatatatgtgag
gaaagcatgaagagaagacagttgaatattgactctatcaaagttgctcttacaagatac
catacggcaaagcaagctaaagttggtatgcttccaaacttgcatattttgagcaggaat
tgtttggtagctgatgctcagaaggaaaatcttgggaggttgtgtatcactgttgcagtt
gaaattgccaatggtgcttctgttgaattggatgacgtccgagacattctgataccaatt
cttcttggaactgttgttaaagggttcttggaggttaaaaaagtggatattttgtggaat
aatctgcccaaggcatcaaagtcccttaaaggttcttctggagaactttatttgaggatt
tcaatgtcaaaaagtggcgataaagcacaaatatggagtgttcttcaggatgtgtgtctt
ccaataatggatctgattgattgggagcgcagtcacccagacaatatttatgacatatgt
tttacccatggcatagattctgcatgggaatattttataagaagtttgaggtctgcatta
tctgatgttgggaagactgtacttccagagcatttgcttcttgttgcaaattctctttca
tttactggacagtttcttggattgagtgcacctgggctaaagaagcaaaggcatttgaca
tccatctcatccccctttatgcttgcttgcttttctagtcctggtgcttgcttcatcaag
gctgctaaagaaggggctaaggatgatcttttggggactttggatgcactggcttgggga
aagaaggctccgatcggaactggcggacattttgatattttatattctggagaggggcat
aaacttgatgagcctcaggatatctatgacatcttgtgtcaccaactgaaatcgcagggg
gagaatattgagaacagggtatctcataatcccaaaaataccggactgagctctagtcaa
cttaacctttttcaaatactcaagggtcataaaagtatctgcaaggaatgggattctcaa
tcattgtctataagtgatgatcctccacataaaggacagagaagtttggattgcatatta
gattcggttctaagaaatttctattctgcagatgatattttgaggatgaacatttcattg
aagaacattttacaagagtacgagattgatgagtgcttaaatgaaagagacaaatccatg
ttgttgaaggcattgtatttccaccctcgaagagatgaaaagatgggatgtggacctcaa
gacatcaaggtgcaagttgcacattgcagaagtgtatatatatatatatatatatttaat
gagattaagcttactcgaagacaacttgttttcaggtgcaagctgctctttgtggaagta
tag

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