Macadamia integrifolia (macadamia nut): 122076138
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Entry
122076138 CDS
T07436
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
122076138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ming03400
]
122076138
Enzymes [BR:
ming01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122076138
DNA repair and recombination proteins [BR:
ming03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
122076138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
122076138
NCBI-ProteinID:
XP_042497375
LinkDB
All DBs
Position
4:complement(24797483..24835170)
Genome browser
AA seq
1182 aa
AA seq
DB search
MSDQMVKFSVLCSMFNWMQRSKSSAQKRSKFRKFLDNFCKPGYYFSAIRLILPSLDRERG
TYGLKESVLATCLIDAIGMSRDSEDALRLMNWRKGGAKTGANAGNFALVAAEVLQRRQGM
ASGGLTIKELNDLLDRLASSENRAEKTNILSDLITKTNAQEMKWIIMIILKDLKLGISEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKAVRPQLAMRVADANAAW
KKLHGKEMVVECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYRHAMSTIIIENILVGRCIL
DGEMLVWDTSTNRFAEFGSNQEIAKGAREGLDSDRQLCYVAFDILYVGDTSVIHQSLKER
HELLRKVVRPLKGRLEILLPNGGLDAHHPLGDPCWSLTASSVEDIERFFKETIENRDEGI
VLKDLGSKWEPSDRSGKWLKLKPDYIHPSSDMDILIIGGYYGSGRRGGEVAQFLMGLAQR
SAPNVYPRRFVSFCRVGTGLSDEELDTLVNKLKPYFRRNEYPKKAPPSFYDVTHNSKERP
DVWIDSPEKSVILSISSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQYFVDLV
HSSNGNTHRGTDYGAPKDDKPKRVKSSTRGGRKHISVVPSHFIQTDTSRVKETTFIFANM
VFYFVNVPPMHSLDFFHKMVAENGGSFSMNLNDIVTHCIAAEQKGIKYQAAKLRSDIIHY
SWILDCCSQKRLLHLQPKYYLFLSDSSKKMLLEEVDEFSDSYYWDLHVSDLKQLFRNIER
SGDPKSVDYYKKKYCPMEKWCRFQGICIYFWRPLLSISKEWEVLLELAVRRLRLEISIRG
GEVTDSLSHATHLVVLSELGSCVDFDTIFKSFSAPDEHLVRNKRLHVVEYQWLEDSLEKD
QKLQEEKYSLKPSGFDNLLIDRSKNDPEVLQELVNAETKNIVSERVEGWSRGRHTPESQR
ISAFTEKDEKQRRGRPRRINTKRGGACSRRVQRTRARLGNRRAKIDEYESDSSASSREPM
TKEDLGAAREPDDVHRIGSENMESQVSERPEGSETSHRGDVAKEGAAEAARRKQLFDKAH
MIDFGGSGDGEKIEGSGNSCIAREDGKDNLGKLEMMIDPVQSMLLNMIPSLGMTQVENTN
SGLQETNSVQEEKPRVDSDAEPVKKKKKVSYKDVAGDLLKDW
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcaaatggtgaagttcagtgttctgtgcagtatgttcaattggatgcaacga
agcaagtcatcagcacagaagcgttccaagtttcgtaaattcctcgacaatttctgcaag
ccagggtactacttcagtgctattcgattaattcttccgtctctcgatcgagagaggggg
acatacggcttgaaggagtctgtgctcgcgacttgtctcattgacgcaatcggaatgtcg
agggattcggaagatgctcttcgcctcatgaattggcgcaagggaggagcgaaaactggt
gccaatgccggcaactttgcgcttgtcgctgctgaggttttacagcgcaggcaagggatg
gcttctggaggactaacaatcaaggaattgaatgatctgcttgatcgactggcttcaagt
gaaaatagggcagaaaagacaaatattctttctgatctcatcacaaaaaccaatgcacag
gaaatgaagtggattataatgatcattcttaaagatctcaagctgggaattagtgaaaag
agcattttccatgaatttcatccagatgctgaagacttgtttaatgtcacttgtgacttg
aagttagtttgtgaaaagttgagggatcgaagtcagcggcacaaacgacaggacatagaa
gttggaaaagctgtgcgtcctcaacttgctatgagagttgctgatgccaatgctgcatgg
aagaagctgcatggaaaggaaatggtcgttgagtgcaaatttgatggagatcgaatccaa
attcataagaatggcacagagatacactttttctcacggaactttcttgatcattctgaa
tatagacatgcaatgtcaactattattatagaaaatatcctggttggcaggtgtatactt
gatggagaaatgttggtttgggacacatctaccaatcgttttgcagagtttggctcaaat
caagaaatagcaaagggagcaagggaaggactagacagtgatcgacagttatgctatgtt
gcatttgatattctttatgttggagacactagtgtcatccatcagagtttgaaggaacga
catgagcttctacggaaagttgtaaggcctttgaagggtcgtttggaaatattattgcct
aacggtggtcttgatgctcatcatcctttaggggatccatgttggtctcttactgcaagt
agtgtggaagacattgaaaggtttttcaaggaaactattgaaaacagagacgaaggaatt
gtgctgaaagaccttggttctaaatgggaacctagtgatcgaagtggaaagtggctaaag
ttgaaaccggattacatacatcctagttctgatatggacattctgatcataggagggtac
tatggatctggacgtcgaggaggagaggtagctcaatttttgatgggccttgcgcagcgt
tctgcccccaatgtatatcctagacggtttgtttcattttgcagagtcggaactggactc
tccgatgaagagcttgacactcttgttaacaaattgaagccctacttcaggaggaatgag
tacccaaagaaggcaccaccaagcttttatgatgtaacacataattcaaaggagagacca
gatgtttggattgacagccctgaaaagtcggtcatactctccattagtagcgatatccga
acgatcaggtcagaggtatttgctgcaccctacagtttgaggtttcctcgtattgaccgg
gtgagatatgacaagccttggcatgagtgccttgatgtgcagtattttgtcgacttggtt
cactcaagtaatggcaacacacatagggggacagattatggagccccaaaagatgataaa
ccaaaaagagtaaaatcctcgactaggggagggagaaagcacatctctgttgtcccttct
cattttattcagactgatacctccagggttaaggaaacaaccttcatatttgcaaacatg
gtgttttactttgtcaatgtgcctccaatgcactctttagatttctttcacaaaatggtg
gctgagaatggaggttctttctcaatgaatctgaatgatattgttactcactgtattgct
gctgaacagaaagggatcaaatatcaggcagctaagcttcgtagtgatattattcattac
tcatggattttggattgttgctcacaaaagcgtctcctgcatctacagccaaagtactac
ctttttctctcggattcttcaaagaaaatgttactggaagaagttgatgaattctccgac
tcttactattgggatcttcatgtttcggaccttaaacagctcttcagaaacatagaaaga
tcaggggaccccaaaagtgtggactattataagaagaagtactgcccaatggagaaatgg
tgtcggtttcagggaatttgcatttatttctggcgtccattactctctataagtaaagag
tgggaagtcttgctggagcttgcggtgcggaggttgaggcttgaaatctctatacgaggt
ggtgaagtcactgacagtctttcacatgctactcatttggtagtcctttcagaactaggt
tcttgtgtggacttcgataccatattcaagagtttctcagcaccagatgaacatcttgtg
aggaacaagcggttgcatgttgtggagtatcagtggttagaggattccttggaaaaggac
caaaagttgcaagaggagaaatatagtttaaagcccagtggattcgataacttacttatt
gatcggagcaaaaatgaccccgaagttcttcaggagctggtcaatgctgaaaccaaaaac
atagtttctgaaagggttgagggatggagtagaggcagacatactccggagagtcagaga
atttcagcattcactgagaaggatgaaaaacagagaaggggcagacctaggcgcataaac
acaaagagaggaggagcatgttcaagacgagtgcagagaacacgagcaaggcttggaaat
agacgggcaaaaatagatgagtatgaatcagatagctctgcttcctcacgtgagcccatg
actaaggaagacttgggagcagcaagggagcctgatgatgttcatagaataggctcagaa
aacatggaaagccaagtgagtgaaagacctgaaggttctgagacatcacacagaggtgat
gtagccaaagagggggctgctgaagctgctagaaggaaacaattgtttgataaagctcat
atgattgactttggtggttctggtgatggtgagaagatcgaagggtcaggtaactcgtgt
atagccagagaagacgggaaagacaacttgggaaagttagaaatgatgatagatccagtt
caatctatgctactaaacatgattccaagtcttgggatgacacaagttgagaatacaaat
tctggtctccaagaaacaaattctgttcaagaggagaaaccacgggtggattctgatgca
gagcctgtaaagaagaaaaagaaggtcagctacaaggatgttgctggtgatttactcaag
gattggtaa
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