Macadamia integrifolia (macadamia nut): 122076223
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Entry
122076223 CDS
T07436
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122076223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ming03041
]
122076223
Spliceosome [BR:
ming03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122076223
Complex C
U5 SnRNP specific factors
122076223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Septin
EF-G_D2
Ras
Motif
Other DBs
NCBI-GeneID:
122076223
NCBI-ProteinID:
XP_042497484
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All DBs
Position
4:32545305..32560685
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AA seq
988 aa
AA seq
DB search
MDDSLYDEFGNYIGPDIESDRDSDVGEEDEDLPDKADEEAPTSDDENTAAASAGWIQSTN
DVDMDNQVVLAEDKKYYPTAEEVFGDDVEALVMDEDEQPLEQPIIKPVKNIKFELGVKDS
STYVDTKFLLGLMSNPLLVRNVALVGHLQHGKTVFMDMLIEQTHHIATFDPNSEKHMRYT
DTRIDEQERRISIKAVPMSLVLEDSNAKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLI
VDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPKDAYHKIRHTIEVINNH
ISAVSSTAGGVQTIDPAAGNVCFASSSAGWSFTLQSFAKLYSKLHGIPFDASKFASRLWG
DMYYHPDARVFRRKPPASGGERSFVQFILEPLYKIYSQVIGEHKKSVESTLAELGVTLSN
AAYQLNVRPLLRLACSSVFGTATGFTDMLVNHIPSAKDAAAKKVEHIYTGPKDSSVYEAM
ENCEPYGPLMINVTKLYPKSDCSVFDAFGRVYSGEIQTGQTVRVLGEGYSPDDEEDMTIK
EVTKLWVYQSRYRIPISKAPPGSWVLIEGVDASIMKTATLCNVDYDEDVYIFRPLKFNTL
PVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLR
ELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLEKGLAEDIENGVV
SIDWPKKKLGDFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPSEVDKNLLNAVKDS
IVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGTGQIIPTARRVAYSAFLMATP
RLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFET
DLRYHTQGQAFSLSAFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSE
DVSINKFFDEAMVVELAQQAAELHQQMI
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatgacagcttatatgatgagtttgggaactatattggaccagatatagaatctgat
agagactctgatgttggtgaggaagatgaggacctacctgacaaagctgatgaggaagca
ccaacctcagatgatgagaacacagctgctgcttcagctggatggatacaatctactaat
gatgttgacatggataaccaggttgtgcttgctgaagacaagaagtattaccctacagca
gaagaggtatttggtgacgatgttgaggcccttgtgatggatgaagatgagcagcccctt
gaacaaccaattataaagcctgtcaagaatattaaatttgagttgggtgtgaaggattct
tctacctatgtagatacaaaattccttctgggtcttatgtcaaaccccttgctggttagg
aatgttgcccttgtcgggcacctccagcatggtaaaacagttttcatggacatgctgatc
gagcaaacccatcacatcgcaacatttgatccaaatagcgagaagcacatgagatacact
gacacgaggatagatgagcaagagaggaggatctcaatcaaggcagtgcccatgtctctt
gtgcttgaggatagcaatgcaaaatcctacttatgtaatattatggacactcctggccat
gtcaatttctctgatgaaatgactgctgctcttagacttgctgatggtgctgtattgatt
gtagatgctgctgaaggagtaatggtaaacacagagagggccatacgccatgcaattcaa
gaacgacttccaattgtagttgtgatcaataaggttgacaggttgattacagaattaaaa
ttgcccccaaaggatgcttaccataagataaggcatacaatagaagtcatcaacaaccac
atatctgccgtctcttctactgcaggaggtgtacaaaccattgatccagctgccgggaat
gtttgctttgcaagttcaagtgctggttggtccttcactttgcaatcatttgctaaactt
tattctaagcttcatgggatcccattcgatgcttctaaatttgctagccgcctttgggga
gacatgtactatcatcctgatgctagggttttcaggaggaagccccctgctagtgggggg
gaaagatcatttgtgcagtttatcctggagccactctataaaatctatagccaagtaatt
ggagaacataagaagagtgtggagtcaactcttgctgaacttggtgtcacacttagtaat
gcagcctaccagttgaatgttagacccttgctaaggttggcttgtagctcagtttttgga
actgcaacagggtttacagatatgctagttaatcacatcccatcagccaaggatgctgct
gctaagaaggtggaacatatatatacaggacccaaagactcgtcggtttacgaggccatg
gaaaactgtgaaccttatggtcctcttatgatcaatgtcacaaaactttatcctaagtct
gattgcagtgtatttgatgcttttggtagagtctacagtggtgagatacagactggacag
actgtacgtgtattaggtgaaggttactcaccagatgatgaagaggacatgactataaaa
gaagtaacaaagttatgggtttatcaatctcgttacaggatacccataagcaaggctcct
cctggatcttgggttctcattgaaggtgtggatgcttcaattatgaagactgctacactt
tgcaatgtggactatgatgaggatgtgtacatattccggcctctaaagttcaatactctc
cctgttgtcaagacggcaactgaacctttgaatccaagtgagttacccaagatggtggaa
ggtcttaggaagatcagtaagagttatcctttggcaattacgaaggttgaggagtctggt
gaacataccattttgggtactggagagttatatttggactctataatgaaggaccttagg
gagctatattctgaagtagaagttaaggttgcagatcctgttgtttcgttctgtgagaca
gtggtggagtcttcatcaatgaaatgttttgctgaaacaccaaacaaaaagaacaaaata
accatgattgcagagcccctggaaaagggacttgcagaggatattgaaaatggtgttgta
agcattgattggcctaaaaagaaacttggtgatttcttccaaacaaaatatgattgggat
ctgctagcagcacggtctatttgggcatttgggcctgataagcagggacctaacatttta
ttagatgatactcttccaagtgaagttgacaaaaatttgctaaatgccgtcaaggattcc
attgttcaagggttccagtggggtgctcgagaagggccactttgcgatgagcccattaga
aatgtaaaattcaagattgttgatgcaaggattgctcctgagcctttgcatcggggcact
ggtcagatcattccaactgctcgacgggtggcttattcagcattcctcatggcaactcca
aggctcatggaacctgtatactatgtagagatccaaaccccaatagactgtgtatctgca
atctacacagtgttatctcgtaggcgtggacatgttacggctgacgttcctcaaccagga
actcctgcttacatcgtcaaggcatttttaccggtgatagaatcatttgggtttgagaca
gacttgaggtaccatactcaaggacaagcattttccctctctgcatttgaccattgggct
atagttcctggggatccccttgacaaaagcatagtcctgcggccccttgaacctgcacca
attcagcaccttgcacgagaattcatggtgaagacaagacgtcggaagggaatgagtgaa
gatgttagcataaataagttttttgatgaagctatggtggtggagctggctcagcaggca
gctgagcttcatcagcagatgatatga
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