Minwuia sp. contig_746: ACMVY4_09540
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Entry
ACMVY4_09540 CDS
T11151
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
minw Minwuia sp. contig_746
Pathway
minw03030
DNA replication
minw03410
Base excision repair
minw03420
Nucleotide excision repair
minw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
minw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACMVY4_09540 (ligA)
03410 Base excision repair
ACMVY4_09540 (ligA)
03420 Nucleotide excision repair
ACMVY4_09540 (ligA)
03430 Mismatch repair
ACMVY4_09540 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
minw03032
]
ACMVY4_09540 (ligA)
03400 DNA repair and recombination proteins [BR:
minw03400
]
ACMVY4_09540 (ligA)
Enzymes [BR:
minw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACMVY4_09540 (ligA)
DNA replication proteins [BR:
minw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACMVY4_09540 (ligA)
DNA repair and recombination proteins [BR:
minw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACMVY4_09540 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACMVY4_09540 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACMVY4_09540 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACMVY4_09540 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
XOY54653
LinkDB
All DBs
Position
1970604..1972682
Genome browser
AA seq
692 aa
AA seq
DB search
MSDTPEAARDEHAKLVAEIREHDRRYHGEDAPTISDADYDALRRKLLALEAEHPELVTED
SPSQTVGAAPASGFGKVLHARPMLSLGNAFSEEDVADFTGRIRRFLNLGEDEEIAINAEP
KIDGLSASLRYEKGKFVLGATRGDGREGENVTANLKTVGDIPETLPEGVPEVFEVRGEVY
MSKTAFRALNEAQAAAEKQIYANPRNAAAGSLRQLDASITATRKLSFFAYSWGEVSALPA
ETQSGVLKAFEDWGFTVNPLTRLCRSVDEIMSLYREIEAERGELDYDIDGVVYKVDRLDW
QDRLGYVSRSPRFAIAHKFPAEKAMTVLNGIDIQVGRTGSLTPVARLEPVTVGGVVVSNA
TLHNEDEIARKDIRIGDTVIVQRAGDVIPQILGFLPEKRPPDSKPFEFPEVCPACGSHAV
RDVRESGEMDVRRRCTGGLICPAQAVERLKHFVSRNGFDIEGLGAKQIEMFYETGEVMAP
ADIFTLKARNDRLKLEEREGFGELSVKNLFDAIDERRKIGMDRFLNALGIRNIGQQTARV
LAANYLSLDALLSVARKAAEEGPESEAWAELTNIDGIGNTAVSALTEFLAEPHNADVLER
LLAEVEVQDFDAPAQDSPVAGKTVVFTGTLEAMTRDEAKARAEALGAKVSGSVSKKTDYV
VAGPGAGSKAKKAADLGIATLTEQEWLELIGG
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacgcccgaggcggcgcgggacgagcacgcgaagctggtcgcggaaatccgc
gagcatgaccgccgctatcacggggaggacgcgccgaccatctcggatgccgactacgac
gcgctgcgcaggaagcttctggcgctggaagccgagcatccggaactggtgaccgaggac
agcccgagccagaccgtcggcgccgcgcccgcttccggcttcggcaaggtgctgcacgcc
cggcccatgctctcgctcggcaatgccttctcggaagaggacgtggccgatttcaccggc
cgtatccggcgtttcctcaatctgggcgaggacgaggagatcgccatcaatgccgagccc
aagatcgacgggctctcggcctcgctccgctacgagaaggggaagttcgtgcttggcgcg
acgcgcggcgacgggcgcgagggcgagaacgtcaccgcgaacctgaagaccgtcggcgac
atccccgagacgctgcccgagggcgtgccggaggtcttcgaggtgcgcggcgaggtctac
atgtccaagaccgccttccgcgcgctgaacgaggcgcaggcggcggcggaaaagcagatc
tacgccaatccccgcaacgccgctgccggctcgctgcgccagctcgacgcttccataacc
gcgacccggaagctgagcttcttcgcctacagctggggcgaggtctcggccctgccggcc
gagacgcagtccggcgtgctgaaggcgttcgaggactggggcttcaccgtcaatccgctg
acccggctctgccgcagcgtcgatgagatcatgtcgctctaccgagagatcgaggccgag
cggggcgaactggactacgacatcgacggcgtcgtctacaaggtcgaccgcctcgactgg
caggaccggctcggttacgtcagccgcagcccgcgcttcgccatcgctcacaagttcccc
gctgagaaggcgatgactgtgctgaacggcatcgacatccaggtcgggcgcaccggctcg
ctgacgcctgtcgcgcggctggagccggtcacggtcggcggcgtcgtcgtctccaacgcg
accctgcacaacgaggacgagatcgcgcggaaggacatccgcatcggcgacacggtgatc
gtgcagcgcgccggagacgtgatcccccagatcctcggcttcctgcccgagaagcgcccg
ccggattcgaagccgttcgaattccccgaagtatgcccggcctgcggcagccatgccgtc
cgcgatgtccgcgaatcgggcgagatggatgtccgccggcgctgcaccggcggcctgatc
tgtccggcacaggcggtggagcggctgaagcactttgtttcccgcaacggcttcgacatc
gaggggctcggcgcgaagcagatcgagatgttttacgagaccggcgaggtgatggcgccc
gccgacatcttcacgctgaaggcccgcaacgaccgcctgaagctggaggagcgcgagggc
ttcggcgagctgtcggtgaagaacctgttcgacgccatcgacgagcgccggaagatcggc
atggaccggttcctgaacgcgctcggcatccgcaatatcggccagcagaccgcgcgcgtg
ctggcggcgaactacctctccctcgacgccctgctgtccgtcgcgcgcaaggccgccgaa
gaggggccggagagcgaggcctgggcggaactgaccaacatcgacggcatcggcaacacg
gcggtctctgcgctgacggagtttctggcagagccgcacaatgccgacgtgctggaacgg
ctgctggccgaggtcgaggtgcaggacttcgacgccccggcgcaggattcccccgtcgcc
ggcaagaccgtggtcttcaccggcacgctggaggccatgacccgcgacgaggccaaggcc
cgcgccgaggcgctgggtgcgaaggtctccggctcggtgtcgaagaagaccgactacgtc
gtcgccggccccggcgccggatcgaaggcgaagaaggccgccgacctcggtatcgcaacg
ctcaccgaacaggaatggctggagctgatcggggggtag
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