Microbacterium sp. No. 7: AOA12_10345
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Entry
AOA12_10345 CDS
T04102
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mio
Microbacterium sp. No. 7
Pathway
mio03030
DNA replication
mio03410
Base excision repair
mio03420
Nucleotide excision repair
mio03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AOA12_10345
03410 Base excision repair
AOA12_10345
03420 Nucleotide excision repair
AOA12_10345
03430 Mismatch repair
AOA12_10345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mio03032
]
AOA12_10345
03400 DNA repair and recombination proteins [BR:
mio03400
]
AOA12_10345
Enzymes [BR:
mio01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AOA12_10345
DNA replication proteins [BR:
mio03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AOA12_10345
DNA repair and recombination proteins [BR:
mio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AOA12_10345
NER (nucleotide excision repair)
GGR (global genome repair) factors
AOA12_10345
MMR (mismatch excision repair)
DNA ligase
AOA12_10345
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AOA12_10345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
HHH_5
BRCT
HHH
Nlig-Ia
PTCB-BRCT
HHH_8
SnoaL_2
HHH_3
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
ALJ20288
UniProt:
A0A0P0EET1
LinkDB
All DBs
Position
complement(2222610..2225015)
Genome browser
AA seq
801 aa
AA seq
DB search
MPENEISLDAARVEAEELTSRILEAKDAYYGRDTSLVDDATYDAWMRRLEALERLHPELQ
GQDSPTQMVGAAEASGLAEIEHAERMLSLDNVFSVDELREWADKTVAAAGREVAWLTELK
IDGLALSLRYESGVLTSAATRGTGRIGEVVTENALRLADIPERLRGEGHPPLMEVRGEVF
IPVAAFEELNAAQASYRERAYAEAWDRWNARKAPGRDFDEERARTAAARRFPAFANPRNA
ASGGLRQQLDKKSGLELEAGLKRIASLSLYVHGIGAWPDPPVAAQSEVYDLLAAWGLPVS
PHTRVCHGIGEVVAFVERFAERRHDVEHELDGIVVKVDELALHAELGQTSRAPRWAIAYK
YPPEEVHTRLLDIVVSVGRTGRATPYAVMEPVHVAGSVVRQATLHNQDVVKAKGVLIGDT
VVLRKAGDVIPEVLGPVVDKRDGTEREFVMPADCPECGTPLRPMKEGDIDLRCPNARSCP
AQVRGRVEHIGSRGALDIEVLGEVTAAALTQAEPPTVAPLETEAGLFSLVLDDLVPITVL
VRDAETGEPKVDDEGERVRRSPFQKLGPATYPPGTEGMDAAERRRLGIRKDHREVLPSEA
ALKLLVELERAKTKELWRLLVSLNIRHVGPVAARALAQWFGSLDAIRAASIEELAAVDGV
GPIIAESIQEWFEADWHREIVERWAEAGVQWSTPGHPGPGAAVAAGGVLEGLTVVATGTL
EGYTREGAQEAIIQAGGKAASSVSKKTDFVAAGPGAGSKLAKAEELGIRILDAAQFHVLV
TEGPGALDAPEPEGEAEPEGA
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
gtgccggagaacgagatctcgctggatgccgcccgcgtcgaggccgaggagctgacctcg
cgcatcctcgaagccaaggacgcctactacggtcgcgacacctcgctcgtcgacgacgcg
acgtacgacgcgtggatgcgccggctcgaggccctcgagcgcctccatcccgagctgcag
ggccaggactcgccgacgcagatggtgggcgcggccgaggcgagcgggctcgcggagatc
gagcacgccgagcggatgctcagcctcgacaacgtgttctcggtcgacgagctgcgcgag
tgggcggacaagaccgtcgccgccgccgggcgcgaggtcgcgtggcttacggagctcaag
atcgacgggctcgccctcagcctccgctacgagagcggcgtgctcacgtcggccgcgacg
cgcggcacgggccgcatcggcgaggtcgtcaccgagaacgccctgcgcctggccgacatc
cccgagcgcctgaggggcgagggccacccgccgctgatggaggtgcgcggcgaggtgttc
atccccgtggccgcgttcgaggagctgaacgcggcgcaggcctcgtatcgcgagcgcgcc
tacgcggaggcgtgggaccggtggaacgcgcgcaaggcgccggggcgcgacttcgacgag
gagcgggcgcgcaccgcggcggcgcggcgcttccccgccttcgcgaacccgcgcaacgcg
gccagcggcgggctgcggcagcagctcgacaagaagagcgggctggagctcgaggccggg
ctgaagcggatcgcgtcgctgtcgctgtacgtgcacggcatcggcgcgtggcccgatccg
ccggtcgcggcgcagagcgaggtgtacgacctgctcgccgcgtgggggctccccgtgagc
ccgcacacgcgcgtgtgccacggcatcggcgaggtggtcgccttcgtcgagcgcttcgcc
gagcgccggcacgacgtcgagcacgagctcgacggcatcgtcgtcaaggtcgacgagctc
gccctgcacgccgagctcggccagacgagccgtgcgccgcgctgggcgatcgcctacaag
tacccgcccgaggaggtgcacacccgcctgctcgacatcgtcgtgtcggtcggccgcacg
ggacgcgcgacgccgtacgcggtcatggagcccgtccacgtcgccggcagcgtcgtgcgc
caggcgacgctgcacaaccaggacgtcgtgaaggccaagggcgtgctcatcggcgacacc
gtcgtgctccgcaaggcgggcgacgtgatccccgaggtgctcggccccgtcgtcgacaag
cgcgacgggaccgagcgcgagttcgtgatgccggccgactgtcccgagtgcggcacgccg
ttgcggccgatgaaggagggcgacatcgacctgcgctgcccgaacgcccgttcgtgcccc
gcacaggtgcgcgggcgcgtggagcacatcggctcgcgcggggccctcgacatcgaggtg
ctcggcgaggtgaccgccgcggcgctcacccaggcggagccaccgaccgtcgcgccgctg
gagacggaggcgggcctcttctcgctcgtgctcgacgatctcgtgccgatcacggtgctg
gtccgcgacgcggagaccggtgagcccaaggtcgacgacgagggcgagcgcgtgcgccgc
tcgccgttccagaagctggggccggcgacctacccgcccggcaccgaggggatggatgcc
gcggagcgccggcggctcggcatccgcaaggaccaccgcgaggtgctgccctccgaggcg
gcgctaaagctgctcgtggagctggagcgggcgaagacgaaggagctctggcgcctgctg
gtgtcgctgaacatccggcacgtgggccccgtggccgcgcgtgcgctcgcccagtggttc
ggctcgctcgacgcgatccgcgccgcgagcatcgaggagctcgcggccgtcgacggcgtc
gggcccatcatcgccgagtcgatccaggagtggttcgaggccgactggcaccgcgagatc
gtggagcggtgggccgaggcgggcgtgcagtggagcacgccgggccatccgggaccgggc
gccgccgtcgcggccgggggagtgctcgaggggctcacggtcgtcgcgaccggcacgctc
gagggctacacccgcgagggcgcgcaggaggcgatcatccaggcgggcggcaaggccgcc
tcgagcgtctcgaagaagaccgacttcgtcgcggccggccccggcgcgggctccaagctg
gcgaaggcggaggagctcggcatccgcatcctcgacgcggcgcagttccacgtcctcgtg
acggaggggcccggggcgctcgacgcacccgagccggagggggaggctgagccggaggga
gcctga
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