Micromonas commoda: MICPUN_85209
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Entry
MICPUN_85209 CDS
T02695
Name
(RefSeq) predicted protein
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
mis
Micromonas commoda
Pathway
mis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MICPUN_85209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mis03019
]
MICPUN_85209
Messenger RNA biogenesis [BR:
mis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
MICPUN_85209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_25
nSTAND3
AAA_23
AAA_28
AAA_22
SRP54
TsaE
AAA_16
ORC-CDC6-like
Motif
Other DBs
NCBI-GeneID:
8246602
NCBI-ProteinID:
XP_002504411
JGI:
MicpuN3_85209
UniProt:
C1ED01
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All DBs
Position
9:join(1137797..1138236,1138299..1138512,1138581..1139030)
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AA seq
367 aa
AA seq
DB search
METAGPFAALAKRKAEEASGGAAPAADTQAVPAPTDAATTAAVRETSSDTTQVWGVNVNN
LDWSYPNIDGTPIDGQEPLIKGMDLKLAPGSCCLLLGANGAGKTTLLKILGGKHMVPKDK
VLIHGREAFYDTGLTTSGQLSYIGGNWQRDVAFAGYGVTLAGDFPARQMLDSIPNVDPER
KARIIDVLDIDPEWRMHQVSDGQRRRVQLAYGLMIPYSVLLLDEITVDLDVLGRADLMSF
LRRECEERNVTIVYATHIFDGLEQFATHVAFVAGGRLRFCEPLDAIDGLKSREPGSLLDT
VQVWLRQEAEAKRKERESAGFVKKKVFEYVRNSGWGEGRMASTVSFGPELGQKHVGMKGS
SNAVMRN
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atggagaccgccggtccgttcgcggcactcgccaagcgaaaggcggaggaggcatcggga
ggcgcggctcccgccgctgatacccaggccgttcccgccccgacagacgcggcgacgacc
gcggcggttcgcgagacatcctccgacaccacgcaggtgtggggcgtcaacgtcaacaac
ctggactggtcctacccgaacatcgacggcacccccatcgacggtcaggagcccctcatc
aagggcatggacctcaagctcgcgcccggatcgtgctgcctcctgctcggcgcgaacggc
gcggggaagacgacgctgctcaagatactcgggggtaagcacatggtccccaaggacaag
gtgctcatccacggccgcgaggctttctacgacaccggactcaccacctccggacagctg
tcgtacatcggcggcaactggcaacgcgacgtcgccttcgccggctacggcgtcaccctc
gccggggacttccccgcgaggcagatgctcgactccatcccgaacgtggaccccgaacgc
aaggcgcggatcatcgacgtcctggacatcgacccggagtggcgcatgcaccaggtgtcc
gacggccagcgcagacgcgtgcagctcgcgtacgggctcatgattccctactcggtttta
ctcttggacgagatcaccgtggacctcgacgtgctgggcagggcggacttgatgtcgttt
ttaaggcgggagtgcgaggaacggaacgtgacgatcgtgtacgccacgcacatcttcgac
gggctggagcagttcgcgacgcacgtcgcgttcgtcgcgggggggcggctgcgtttttgc
gaacccctcgacgccatcgacgggctcaagtcgcgcgagcccggaagtcttctggacacc
gtccaggtgtggctgcgtcaggaggccgaggcgaagcgaaaagaacgcgaatccgcgggg
ttcgtgaagaagaaggtgttcgagtacgtccgcaacagcgggtggggcgagggacgcatg
gcgagcacggtgtcgtttggaccggagctcggccagaagcacgtcggaatgaaagggagc
tccaacgccgtcatgcgcaactaa
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