Methylomagnum ishizawai: MishRS11D_02160
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Entry
MishRS11D_02160 CDS
T07434
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
misz
Methylomagnum ishizawai
Pathway
misz03030
DNA replication
misz03410
Base excision repair
misz03420
Nucleotide excision repair
misz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
misz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MishRS11D_02160 (ligA)
03410 Base excision repair
MishRS11D_02160 (ligA)
03420 Nucleotide excision repair
MishRS11D_02160 (ligA)
03430 Mismatch repair
MishRS11D_02160 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
misz03032
]
MishRS11D_02160 (ligA)
03400 DNA repair and recombination proteins [BR:
misz03400
]
MishRS11D_02160 (ligA)
Enzymes [BR:
misz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MishRS11D_02160 (ligA)
DNA replication proteins [BR:
misz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MishRS11D_02160 (ligA)
DNA repair and recombination proteins [BR:
misz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MishRS11D_02160 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MishRS11D_02160 (ligA)
MMR (mismatch excision repair)
DNA ligase
MishRS11D_02160 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MishRS11D_02160 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
RNA_pol_A_CTD
PTCB-BRCT
Zn_ribbon_NUD
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BBL73118
LinkDB
All DBs
Position
255605..257629
Genome browser
AA seq
674 aa
AA seq
DB search
MNTPESARHRAAELRGQIEFHNERYHKFDAPVIPDAEFDALMRELIALEHDHPELRTPDS
PTQRVGSAPLKAFAEVRHEVPMLSLDNAFTDGDVADFERRAQKPLHGVALDYLVEPKLDG
LAVSLIYENGLLARAATRGDGQTGEDITHNVRTIRAVPLRLAGAGWPARFEARGEVFMPK
AGFEALNERARRLGEKTFANPRNAAAGSLRQLDPKITAARPLAFFCYGYGAYPTAELPAT
QSELMARFKSWGLPVNPESHVVQGSAACLDYYRDLRARRAGLDYDIDGVVYKIDRLDQRE
TLGFVARAPRWAIAHKFPAEEATTRVTAIEVQVGRTGALTPVARLEPVFVGGVTVTNATL
HNIDEVRRKDIRVGDTVVVRRAGDVIPEVVKSLPELRDTEVPLFELPTHCPVCGSEVETA
EGEAIARCSGGLYCPAQHKEAIKHFASRRAMDIDGLGDKLVDQILDKGLIKTVADLYRLQ
VDELAGLERMGRKSAENLVAALDKSKHTSLPRFLYALGIREVGEVTAQTLAAHFRELPAI
QAADEETLQTVPDVGPSVAHHIHTFFRQPHNLEVVAALLAAGIDWEPMPELPPAAELPLK
GQTFVVTGTLESLSREEAKARLQALGGKVAGSVSKNTRAVIAGADPGSKLAKARELGVEV
LDEAGFLALLDGAA
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgaacacccccgaatccgcccggcaccgcgccgccgaattgcgcggacagatcgaattc
cacaacgagcgctatcacaagttcgacgcgccggtgattccagacgccgaattcgacgcc
ttgatgcgcgaactcatcgcgctggaacacgaccatcccgaactgcggacccccgattcg
cccacgcaacgggtgggttcggccccgctcaaggcgttcgcggaagtccgccacgaagtc
ccgatgctgtcgctggacaacgccttcaccgacggggatgtggccgatttcgagcggcgg
gcgcaaaagcccttgcacggggtggcgctggattatctggtcgaacccaagctggacggg
ctggccgtcagcctcatctatgaaaacggcctcctggcgcgggccgcgacccgtggcgac
ggccagaccggcgaggacatcacccacaatgtccgcaccatccgcgcggtgccgctgcgc
ttggcgggcgcgggctggccggcgcggttcgaggcgcggggcgaggtgttcatgcccaag
gccggtttcgaggcactgaacgaacgggcgcggcggctgggcgaaaaaaccttcgccaac
ccgcgcaacgccgccgccgggagcctgcgccagctcgaccccaagatcaccgccgcccgg
cccctggctttcttctgctatggctacggcgcttatcccaccgccgaactgcccgccacc
caaagcgaactgatggcgcggttcaagtcctggggtttgccggtcaaccccgaatcgcat
gtggtccagggcagcgcggcctgcctcgattattaccgcgatctgcgggcgcggcgggcc
gggctggattacgacatcgacggcgtggtctacaagatcgaccggctggaccagcgcgaa
accctgggtttcgtggcccgcgccccgcgctgggccatcgcccataaattcccggcggag
gaagccaccacccgcgtcaccgccatcgaggtgcaagtcggacgcaccggtgccttgacc
ccggtggcgcggttggagccggtgttcgtcggcggcgtcaccgtcaccaacgccactttg
cacaatatcgacgaagtccggcgcaaggatatccgggtcggcgataccgtggtggtgcgg
cgggcgggcgatgtcatcccggaagtggtgaaaagcctcccggaattacgggacaccgaa
gtcccgctgttcgagttgcccacgcactgccccgtatgtggctcggaggtggaaaccgcc
gaaggcgaggccatcgcccgctgtagcggcggcttgtattgcccggcccagcacaaggaa
gccatcaagcatttcgcctcgcgccgggccatggatatcgacggcctgggcgacaagctg
gtggaccaaatcctcgacaagggtctcatcaaaaccgtggccgacctctaccggctccag
gtcgatgaactggccggtttggagcgcatgggccgcaaatcggcggaaaacctggtcgcc
gcgctcgacaagagcaaacacaccagcttgccgcgcttcctctacgccttgggaatacgc
gaggtgggcgaagtcaccgcccagaccttggccgcgcatttccgcgaactccccgccatc
caagccgccgacgaggaaaccctgcaaaccgtgcccgacgtgggtccgtcggtcgcccac
catatccacaccttcttccgccaaccccataacctggaagtggtcgcggcgctgctggcg
gcgggaatagactgggaaccgatgcccgagttgccgcccgccgccgaattgccgctcaag
ggccaaaccttcgtcgtcaccggcacgctggaatccctatcccgcgaggaagccaaggcc
aggctgcaagccctgggcggcaaggtcgcggggagcgtctccaaaaatacccgcgccgtc
atcgccggggccgatcccggctcgaagctggccaaggcgcgggaattgggcgtcgaggtc
ttggacgaggcggggttcctggctttgttggatggcgcggcctga
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