Mitsuaria sp. 7: ABE85_05815
Help
Entry
ABE85_05815 CDS
T04402
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
miu
Mitsuaria sp. 7
Pathway
miu03030
DNA replication
miu03410
Base excision repair
miu03420
Nucleotide excision repair
miu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
miu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABE85_05815 (ligA)
03410 Base excision repair
ABE85_05815 (ligA)
03420 Nucleotide excision repair
ABE85_05815 (ligA)
03430 Mismatch repair
ABE85_05815 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
miu03032
]
ABE85_05815 (ligA)
03400 DNA repair and recombination proteins [BR:
miu03400
]
ABE85_05815 (ligA)
Enzymes [BR:
miu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABE85_05815 (ligA)
DNA replication proteins [BR:
miu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABE85_05815 (ligA)
DNA repair and recombination proteins [BR:
miu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABE85_05815 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABE85_05815 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABE85_05815 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABE85_05815 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ANH67207
LinkDB
All DBs
Position
1317088..1319211
Genome browser
AA seq
707 aa
AA seq
DB search
MTPSRSASVSSPSAPQTVPQTAVQAAARAAELRAQLHHHAHLYYVLDTPSLPDAEYDKLF
QELQAIEAAFPALLTPDSPTQRVGGQVLDGFEPVRHVVPMLSIRTETDTEASGAENFDAR
VRRELDLGENAAPVEYAAELKFDGLAISLRYEHGVLVQAATRGNGETGEDVTQNVRTIKQ
IPLKLKGEGAKAAVLEVRGEAYMRRDDFEALNERQRAANEKTFVNPRNTAAGAIRQLDPA
LVRQRPLSFFAYGIGETQGWEIPATHGAMLEALQSYGLPVNADRAVVRGAEGLVAFHRSI
GGKRDELPFDIDGVVYKVNSRELQRRLGFVSREPRWAVAHKYPAQEQVTRLDRIDIQVGR
TGKLTPVAKLEPVFVGGTTVSNATLHNLFEMRRKGIRVGDQVIIRRAGDVIPEVVGKVDA
KRASYVPNFRMPRHCPICGSDVVRERGGIDHRCSGGIFCPAQRKQAMLHFAGRRAMDIEG
LGDKLVDQLVDGGIVTSLPGLYKLGVAKLTALERMGDRSALNLIDALEKSKRTTMARFLF
ALGIRQVGETTAKDLAKHFGNMDGLMSATEEQLLAVKDVGPIVAKSIAAFFAEAHNREVV
EQLFAAGVEFPQSEGAAAAPAGPQPLAGKTLVLTGTLPTLSRDEAKELIEAAGGKVSGSV
SKKTSYVIAGEEAGSKLDKARELGVTVLDEEGLQALLAAPPDVLAAG
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgactccctcgaggtccgcttccgtgtcttcgccctccgccccacagaccgtcccacag
accgccgtacaggccgccgcgcgcgccgcggaactccgcgcgcagctccatcaccacgcc
cacctctactacgtgctcgacacgccgtcgctgcccgacgccgagtacgacaagctgttc
caggaactgcaggcgatcgaggccgcgttcccggcgctgctgacgccggactcgccgacg
cagcgcgtgggcgggcaggtgctggacggcttcgagccggtcaggcacgtggtgccgatg
ctgtcgatccgcaccgagaccgacaccgaggccagcggcgccgagaacttcgacgcgcgc
gtgcgccgcgagctggacctgggcgagaacgccgcgccggtcgagtacgcggccgagctg
aaattcgacgggctggcgatcagtctgcgttacgagcacggcgtgctggtgcaggccgcc
acgcgcggcaacggcgagaccggcgaggacgtgacgcagaacgtgcgcacgatcaagcag
atcccgttgaagctcaagggcgagggcgcgaaagccgcggtgctggaagtgcgcggcgag
gcctacatgcgccgcgacgatttcgaggcgctcaacgagcgccagcgcgccgccaacgag
aagaccttcgtgaacccgcgcaacacggctgcgggcgcgatccggcaactggatccggcg
ctggtgcggcagcggccgctgagcttcttcgcctacggcatcggcgagacgcagggctgg
gagatcccggccacgcacggtgcgatgctggaggcgctgcagagctacggcctaccggtc
aacgccgaccgcgcggtggtgcgcggcgccgaaggcctggtggccttccatcgttcgatc
ggcgggaagcgcgacgaactgcccttcgacatcgatggcgtcgtctacaaggtcaacagc
cgcgagctgcagcggcgcctgggattcgtctcgcgcgagccgcgctgggcggtggcccac
aagtaccccgcgcaggagcaggtcaccaggctggatcgcatcgacatccaggtcggacgc
accggcaagctgacgccggtggccaagctggagccggtcttcgtcggcggcacgacggtc
agcaacgcgacgctgcacaacctcttcgagatgcgccgcaagggcatccgcgtcggggac
caggtcatcatccggcgcgccggcgacgtgatcccggaagtggtcggcaaggtcgacgcg
aagcgcgcgagctacgtgcccaacttccgcatgcccaggcactgcccgatctgcggcagc
gacgtcgtgcgcgagaggggcggcatcgaccaccgctgcagcggcggcatcttctgcccg
gcgcagcgcaagcaggcgatgctgcacttcgccggacgtcgggccatggacattgaagga
ctgggcgacaagctcgtcgaccagctcgtggacggcggcatcgtcaccagcctgccgggg
ctctacaagctcggcgtggccaagctcaccgcgctggaacgcatgggcgaccggagcgcg
ctgaacctcatcgatgcgctggagaagagcaagcgcacgacgatggcgcgcttcctcttc
gcgctgggcatccggcaggtcggtgagacgacggcgaaggatctcgccaagcacttcggc
aacatggacgggttgatgagcgcgaccgaggagcagctgcttgcggtcaaggacgtcggt
ccgatcgttgcgaagagcatcgccgccttctttgccgaggcgcacaaccgcgaggtcgtc
gagcagctgttcgccgcgggcgtcgagttcccgcaatcggaaggggccgccgcggcgccg
gccggtcctcagccgctcgccggcaagacgctggtgctgaccggcacgctgccgacgctg
tcgcgcgacgaggccaaggaactgatcgaggccgccggcggcaaggtcagcggctcggtg
tcgaagaagaccagctacgtgatcgcgggcgaggaggccggttccaagctcgacaaggcg
cgcgagctgggcgtcaccgtcctcgacgaggaaggtctgcaggcgctattggccgcgccg
ccggacgtcctcgcggctggctga
DBGET
integrated database retrieval system
