Microbacterium jiangjiandongii: QNO14_07665
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Entry
QNO14_07665 CDS
T11126
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mji Microbacterium jiangjiandongii
Pathway
mji03030
DNA replication
mji03410
Base excision repair
mji03420
Nucleotide excision repair
mji03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mji00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QNO14_07665 (ligA)
03410 Base excision repair
QNO14_07665 (ligA)
03420 Nucleotide excision repair
QNO14_07665 (ligA)
03430 Mismatch repair
QNO14_07665 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mji03032
]
QNO14_07665 (ligA)
03400 DNA repair and recombination proteins [BR:
mji03400
]
QNO14_07665 (ligA)
Enzymes [BR:
mji01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QNO14_07665 (ligA)
DNA replication proteins [BR:
mji03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QNO14_07665 (ligA)
DNA repair and recombination proteins [BR:
mji03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QNO14_07665 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QNO14_07665 (ligA)
MMR (mismatch excision repair)
DNA ligase
QNO14_07665 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QNO14_07665 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
WIM24051
LinkDB
All DBs
Position
complement(1682391..1684730)
Genome browser
AA seq
779 aa
AA seq
DB search
MTDAADFTPAPLDEARAEATALTERILDARDAYYGRNAEVVDDATYDAWMQRLEELEREH
PEIQGQDSPTQTVGAAQSSMFAPVEHAERMLSLDNVFSIDELREWCVKTQASAGRAVRWL
SELKIDGLAISLRYENGLLTSAATRGDGRVGEDVTVNAVQVSGIPQRLSGEGHPPLVEVR
GEVFIPVAAFDELNALQARMRDRVLADALARGMDEEKATRSAARRFPAFANPRNAASGGL
RQQLEKKSGLELEAGRARLESLRLFVHGIGAWPDPPVASQSEVYELLAGWGLPTSPYFRT
YDDVDGVVSFVENYGEHRHAVEHEIDGVVVKVDELDLHGELGATSRAPRWAIAYKYPPEQ
VNTKLLDIVVSVGRTGRATPFAVMAPAQVAGSVVRQATLHNQDVVKAKGVLIGDTVVLRK
AGDVIPEVLGPVVELRDGSERAFVMPADCPECGTPLAPAKEGDIDLRCPNTRACPAQVRG
RVEHIGSRGALDIEALGEVTAAALTQPTVPATPPLETEAGLFDLTLEQLVPIEVIVRDAE
TGEARVDDRTGQPVRRAPFRRNPSPAEKKQGLTGPQPSAQALTLLEELEKAKTKELWRFL
VALNIRHVGPVAARALAQWFGSVAAIRAASRDELAAVDGVGGIIADALTGWFDVDWHREI
VERWEAAGAQLATPGHPGPGAASAAGGVLEGITVVATGSLEGYSREGAQEAIMAAGGKAA
SSVSKKTDFVAAGPGAGSKLAKAEQLGVRIIDAAQFKVLVEQGPDALGAAPATAEAIAD
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
gtgacggatgccgctgacttcacgcccgctccactcgacgaagcccgcgccgaggcgacc
gcgctcaccgagcgcatcctcgacgcgcgagacgcctactacggacgcaacgccgaggtc
gtcgacgacgccacgtacgacgcgtggatgcagcgcctggaagagctcgagcgcgagcac
cccgagatccaaggccaggattcgcccacgcagacggtcggggccgcgcagtcgtcgatg
ttcgctccggtggagcatgcggagcgcatgctcagcctcgacaacgtcttcagcatcgac
gagctgcgcgagtggtgcgtcaagacgcaggcatccgccggccgcgctgtgcggtggctc
agcgagctgaagatcgacggcctggcgatcagcctgcggtacgagaacgggctgctcacc
tcggctgccacccgcggcgacgggcgggtcggcgaggacgtcaccgtcaacgcggtgcag
gtgtccggcatcccgcagcgactgtcgggcgagggccacccgccgctggtcgaggtgagg
ggagaggtgttcatccccgtggccgcgttcgacgagctcaacgccctgcaggcccgcatg
cgcgatcgcgtcctcgccgacgctctcgcgcggggaatggacgaggagaaggcgacgcgc
agtgccgcccgacgcttcccggcgttcgcgaatccgcgcaacgcggccagcggcgggctg
cgccagcagctcgagaagaagagcgggctggagctcgaggcggggcgcgcacgcctggag
tcgctgcgcctcttcgtccacgggatcggtgcgtggcccgatccgccggtggcatcccag
agcgaggtgtacgagctgctcgcaggctggggcctgccgacgagcccctacttccggacc
tacgacgacgtcgacggcgtggtgtcgttcgtcgagaactacggggagcaccgtcatgcc
gtcgagcatgagatcgacggcgtcgtggtcaaggtcgacgaactcgacctgcacggcgag
ctgggtgccaccagccgcgccccgcgatgggcgatcgcctacaagtacccgcccgagcag
gtcaacacgaaactgctcgacatcgtggtgtcggtcggtcgcacggggcgcgcgacgccc
ttcgccgtcatggcgcccgcacaggtggccggcagcgtggtgcgtcaggccacgctgcac
aaccaggacgtggtcaaggccaagggcgtgctgatcggcgacaccgtcgtgctgcgcaag
gcgggcgacgtcattcccgaggtgctggggcctgtcgtcgagctgcgcgacggctcggag
cgggcgttcgtcatgcctgcggactgcccggagtgcggcacgccgctggcgccggcgaaa
gagggcgacatcgacctgcgctgcccgaacacccgcgcctgcccggcgcaggtgcggggc
cgggtggagcacatcggctctcgtggcgcgctcgacatcgaggccctgggcgaggtcacc
gccgccgcgctgacccagccgaccgtccccgcgacgccgcccctggaaaccgaggcgggg
ctgttcgacctcaccctcgagcagctggtgccgatcgaggtcatcgttcgggatgccgag
accggcgaggcccgcgtggatgaccggaccggtcagccggtgcgccgggcgcccttccgc
cgcaaccccagtcccgcagagaagaagcagggactcaccggcccccagccgtcggcccag
gcgctcaccctgctggaggagctcgagaaggccaagaccaaggagctgtggcgcttcctc
gtggcgctgaacatccgccacgtcggtcccgtggccgcccgggccctggcccagtggttc
gggtcggtcgccgcgatccgcgcggcgtcgcgcgacgagctcgctgccgtcgacggcgtc
ggcggcatcatcgccgacgcgctcaccggctggttcgatgtggactggcaccgcgagatc
gtcgagcggtgggaggcggccggcgcgcagctggccacaccgggacacccgggtccaggc
gcagcctcggcagcgggcggcgtgctcgaggggatcaccgtggtggccaccggctccctc
gagggctacagccgtgagggagcccaggaggcgatcatggcggccggcggcaaggctgca
tccagcgtgtccaagaagaccgacttcgtcgctgcgggtccgggggcgggttccaagctc
gcgaaggcggagcagctcggtgtgcgcatcatcgacgcggcgcagttcaaggtgctggtc
gagcagggacccgatgcgctcggtgcggcgccggcgaccgctgaagccatagcggactga
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integrated database retrieval system
