Mucilaginibacter jinjuensis: PQO05_21120
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Entry
PQO05_21120 CDS
T08815
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mjj
Mucilaginibacter jinjuensis
Pathway
mjj03030
DNA replication
mjj03410
Base excision repair
mjj03420
Nucleotide excision repair
mjj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mjj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PQO05_21120 (ligA)
03410 Base excision repair
PQO05_21120 (ligA)
03420 Nucleotide excision repair
PQO05_21120 (ligA)
03430 Mismatch repair
PQO05_21120 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mjj03032
]
PQO05_21120 (ligA)
03400 DNA repair and recombination proteins [BR:
mjj03400
]
PQO05_21120 (ligA)
Enzymes [BR:
mjj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PQO05_21120 (ligA)
DNA replication proteins [BR:
mjj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PQO05_21120 (ligA)
DNA repair and recombination proteins [BR:
mjj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PQO05_21120 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PQO05_21120 (ligA)
MMR (mismatch excision repair)
DNA ligase
PQO05_21120 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PQO05_21120 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
RNA_ligase
HHH
Zn_ribbon_NUD
HVO_2753_ZBP
Motif
Other DBs
NCBI-ProteinID:
WCT11245
LinkDB
All DBs
Position
4905520..4907532
Genome browser
AA seq
670 aa
AA seq
DB search
MSAAQQAKQQIDALTAELRQHTYNYYVLAQPTISDYDFDKKLEHLAELEKQFPEFLEPDS
PTQLIGGEITKEFKTVRHRWPMLSLGNTYNEQELLDFDQRIKKAIGDNFEYVCELKFDGL
SMSITYEHGKLVRAVTRGNGVEGDEVTTNVKTIHSIPKKLGAGDYPDMFEIRGEVFMHRK
AFERLNDERIEAGEVPYANPRNFASGTMKLQDSGEVAKRPLDCFLYFLYTEKVLFKTHWE
SLQAAKSWGFHVSEHSKLCGNISEVLDFINYWEEKRFDLSFDIDGIVIKVNNYNQQEELG
FTAKVPRWAIAYKYKAEQVETVLESVVYNVGRTGAVTPVANLKPVQLAGTTVKRATLHNA
NQILLLDLHEGDSVYVEKGGEIIPKIISVNPAKRKPDAPAIEYVTHCPACGTLLERKEGE
AAFYCPNDEGCPPQIVSKMQHYVGRRAMNIDGLGDETIETLYQKGYIKHISDIYELHNKY
DELKTMDRFGEKSIRNMLDGIEKSKQMPFEKVLFGLGIRYIGETVAKKLVAYFKTIDRLM
AASLEELVAVDEIGERIAQSLIEYFGGEKHREEIAKLQSQGLQFVSEEKEVVLASESLSG
KSFIISGVFEKYSRDELKDIIEQNGGKILSSISAKLNYLVAGDNMGPAKLEKANKLNIPI
ISDEELLGMI
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccgcacagcaagcaaaacaacaaattgatgcattaactgccgagttaaggcag
cacacttataactattacgttctggcccagcccactatatcagattatgattttgataaa
aagctggagcatttagctgaattggaaaaacaattccccgagtttttggaacccgattcg
cccacacaattaatcggcggcgaaatcaccaaagagtttaaaacagttaggcaccgatgg
cccatgctctctctgggtaatacctataatgagcaggaattgctggatttcgatcagcgg
attaaaaaagctattggcgataacttcgaatatgtgtgcgagctgaagttcgatggctta
tccatgagtattacttatgagcatggtaaactggtgcgtgcggtaacccgtggcaatggt
gtggaaggcgacgaggtgactactaatgtaaaaaccatccacagcatacctaaaaaactg
ggagctggcgattaccccgacatgttcgagatccgtggcgaggtatttatgcaccgcaaa
gcctttgagcgtttaaatgatgagcgtattgaagccggagaagtgccttatgccaacccg
cgcaactttgcatccggcacgatgaaactgcaggactcgggcgaggtagccaagcgtccg
ctcgattgtttcctgtatttcctatacaccgagaaagttttatttaaaacccactgggaa
agcctgcaagccgccaaaagctggggtttccatgtgagcgagcatagtaagctgtgtggt
aacatatcagaagtacttgattttattaattactgggaagaaaaacgtttcgatctttct
ttcgatatagatggtatcgttattaaagtaaacaactacaaccagcaggaagagcttggg
tttaccgccaaagtaccccgctgggccattgcctataaatacaaagccgaacaggttgaa
actgtacttgaaagtgtggtttacaacgttggtcgcaccggcgcagtcactcctgttgct
aatttaaaaccggtgcagctggcaggcacaacagtaaaacgtgctacactgcataatgca
aatcagattttattactcgatctgcacgagggcgattctgtttacgttgaaaaaggtggt
gaaattatcccgaagatcatcagcgtaaatccggcaaagcgcaagcccgatgccccggct
attgaatacgtaacccactgccctgcctgcggtactttgttggagcgcaaggaaggcgaa
gcggctttctactgccctaatgatgaaggctgcccaccgcagattgtgagcaaaatgcag
cattacgtaggccgtagagccatgaatattgatggcttgggtgatgaaaccatcgaaacg
ctttatcaaaaaggctatatcaaacacatcagcgatatttacgaattgcataataaatat
gatgagctgaaaacgatggaccgcttcggcgaaaaatcaatccgaaatatgctggatggt
atcgagaaatctaaacagatgccctttgagaaagtgctgttcggcctgggtatccgttac
atcggcgaaactgttgctaaaaaactggtagcttactttaaaaccatcgacaggctgatg
gctgcttccctggaagaactggttgctgttgatgaaattggcgaacgaatagcccaaagc
ctcatcgaatactttggcggtgaaaagcaccgggaagaaattgccaaactgcaaagccag
ggcttacaatttgtatccgaagaaaaagaagtagtactggcaagcgaaagcctcagtggt
aaatcgttcatcatctcgggcgtattcgaaaaatactcgcgcgatgagttgaaggatatt
atcgagcaaaacggcggtaaaattttaagcagtatttcagctaaattgaactatctggta
gctggcgacaatatgggcccggctaaactggagaaagccaataaactcaacattccgatt
attagtgatgaggagttgctggggatgatttaa
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