Mesobacillus jeotgali: FOF60_01730
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Entry
FOF60_01730 CDS
T08547
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mjo
Mesobacillus jeotgali
Pathway
mjo03030
DNA replication
mjo03410
Base excision repair
mjo03420
Nucleotide excision repair
mjo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FOF60_01730 (ligA)
03410 Base excision repair
FOF60_01730 (ligA)
03420 Nucleotide excision repair
FOF60_01730 (ligA)
03430 Mismatch repair
FOF60_01730 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mjo03032
]
FOF60_01730 (ligA)
03400 DNA repair and recombination proteins [BR:
mjo03400
]
FOF60_01730 (ligA)
Enzymes [BR:
mjo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FOF60_01730 (ligA)
DNA replication proteins [BR:
mjo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FOF60_01730 (ligA)
DNA repair and recombination proteins [BR:
mjo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FOF60_01730 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FOF60_01730 (ligA)
MMR (mismatch excision repair)
DNA ligase
FOF60_01730 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FOF60_01730 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
RNA_pol_A_CTD
Nlig-Ia
BRCT_2
5_3_exonuc
Zn_ribbon_NUD
zf-IS66
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
UYZ22339
LinkDB
All DBs
Position
336318..338324
Genome browser
AA seq
668 aa
AA seq
DB search
MDFQSAERKAKDLQNLLNQYSYEYHVLDQPSVPDAEYDRLLRELIEIEEQFPEMQTPDSP
TQRVGGEILTMFNKVQHAIPMLSLGNAFDEQDLRDFDRRVRQGVGEDIGYVCELKIDGLA
VSLIYEDGLLVRGATRGDGTTGEDITSNLKTIRSLPIRLKEPVSLEVRGEAFMPKKSFEA
LNKARKEREEEPFANPRNAAAGSLRQLDPKIAASRNLDVFLYGIANVGDTGIRAHSEGLD
YLEKLGFKTNKERRKVDSIEGVIEYVNSWVEKRPDLPYDIDGIVIKVDSLDQQAELGTTA
KSPRWAVAYKFPAEEVVTTLKDIELSVGRTGVVTPTAILEPVQVAGTTVGRASLHNEDLI
REKDIKIGDKVVIKKAGDIIPEVVNVLAEQRTGDEVEFHMPTECPECGSELVRIEGEVAL
RCINPKCPAQIREGLIHFVSRDAMNIDGLGERVVSQLFAQELIKDVADIYKLTREQLLAL
ERMGEKSVNNLLSAIEATKDNSLEKLLFGLGIRLVGAKAAKTLAQEFGTMDHLMKATKEE
LTAINEIGDKMADSIVTYFDNDEVKELVSELKTVGVNMEYKGPKKVTAEESDSFFAGKTI
VLTGKLEQMGRNEAKEKIEALGGNVAGSVSKKTDLLIAGEDAGSKLTKAESLGIEVWNEE
RMLEELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggattttcagagcgctgagagaaaagctaaggatttgcaaaatctgcttaatcaatat
agttatgaatatcatgttcttgaccagccgtcggttccggatgcggagtatgacaggctt
ttgagggaactgattgaaatcgaggagcaattccctgaaatgcagactcccgactctcct
acacagcgtgttggcggcgagattttaacgatgttcaacaaggtgcagcatgcgattccg
atgctgagcctgggaaatgccttcgatgagcaggacctgcgcgattttgaccgtcgtgtc
cgccagggtgttggcgaagatattgggtatgtatgcgaactgaagatcgatggtctggca
gtctcgctcatctatgaagatgggctgctcgtgcgcggtgcgactcgcggtgatggaacg
actggtgaggatattacgtctaacctgaagacgatccgttccttgccgatccgcctgaag
gaaccagtttcacttgaagtccgcggtgaagcattcatgccgaagaaatcattcgaagct
ttgaataaagcaagaaaagaacgtgaagaagagccatttgccaacccgcgtaatgcggct
gctggctcccttcgacagcttgacccgaagattgctgcttcaagaaatctggatgtattc
ctctatggtattgcaaatgtcggtgatacgggcatccgcgcacatagtgagggactggat
tatctggagaagctcggattcaaaaccaataaagagcgccggaaagtcgacagtattgaa
ggtgttatcgagtatgtgaacagctgggtcgaaaagcgcccagacctgccatacgatatc
gatggcatcgttatcaaggttgattcactcgaccagcaggctgagcttggaacgacggcg
aagagtccgcgctgggcggttgcctacaagttccctgccgaagaagtcgtaacgactttg
aaggatattgagttgagcgtgggccgcacaggtgtcgtcacaccgactgccatccttgaa
ccagtccaggtagctggtactaccgttggacgtgcttccttgcacaatgaagacttgatt
cgggaaaaagatattaaaatcggtgataaagtcgtcattaaaaaagcaggagatattatc
ccggaagttgttaatgtccttgctgagcagcggacaggggatgaagtcgagttccacatg
cctacagaatgccctgaatgcggcagcgaacttgtcaggatcgaaggcgaagtcgcgctt
cgctgtatcaatccaaagtgcccggcacaaatcagggaaggcctgatccacttcgtttcc
cgtgatgcgatgaacattgacggacttggagagagagtggtaagccagctgtttgcacaa
gagctgattaaggatgtagcagacatttataagcttacacgcgagcagcttctggctctt
gagcgaatgggcgagaagtccgtcaacaatttgctgtcggcaatcgaagccacgaaggat
aattcactggaaaagctattgttcggactcggtatccgtctagttggggcaaaagcggca
aagacattggctcaggaatttggaacaatggatcacctgatgaaggcaacgaaggaagaa
ttgacggctatcaatgagatcggcgacaaaatggccgactccatcgtcacttattttgac
aatgatgaagtgaaggaactggtttccgagctcaagactgtcggcgtcaatatggaatac
aaaggacctaagaaggttaccgctgaagaatcggattcgttttttgccggtaaaacaatc
gtgttgaccggcaagctcgagcaaatgggccgaaatgaagcaaaagaaaaaatcgaggcg
ctcggcggcaatgtagccggcagtgtcagcaagaaaacggatttactcattgccggagaa
gacgcaggttcaaagctgacaaaagccgaaagcctggggattgaagtgtggaacgaggag
agaatgcttgaagaattaaataaataa
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