Manis javanica (Malayan pangolin): 108390401
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Entry
108390401 CDS
T06054
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X4
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
mjv
Manis javanica (Malayan pangolin)
Pathway
mjv03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
mjv00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
108390401 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mjv03000
]
108390401 (KDM2B)
04121 Ubiquitin system [BR:
mjv04121
]
108390401 (KDM2B)
03036 Chromosome and associated proteins [BR:
mjv03036
]
108390401 (KDM2B)
Enzymes [BR:
mjv01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
108390401 (KDM2B)
Transcription factors [BR:
mjv03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
108390401 (KDM2B)
Ubiquitin system [BR:
mjv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108390401 (KDM2B)
Chromosome and associated proteins [BR:
mjv03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
108390401 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
108390401 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_4
Motif
Other DBs
NCBI-GeneID:
108390401
NCBI-ProteinID:
XP_017504848
LinkDB
All DBs
Position
Unknown
AA seq
1311 aa
AA seq
DB search
MEAEKDSGRRLRPIDRQRYDENEDLSDVEEIVSVRGFSLEEKLRSQLYQGDFVRAMEGKD
FNYEYVQREALRVPLIFREKDGLGIKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQKGTEM
SMSQFVRYYETPEAQRDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQ
TEATNAIAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNL
ALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLRIYEIEDRTRVQPKFRYPFYYEMCWYVLERYVYCVTQRSHLTQEYQRESMVI
DAPRKPSIDGFSSDSWLEMEEESCEQQPQEEEKEEEEEEEEEGADKAPKPLADGPVSPTS
TPSEDQEASGKKPKAPAMRFLKRTLSNESEDSVKSSAVPVDYPKTPTGSPATEVSAKWTH
LTEFELKGLKALVEKLESLPENKKCVPDGIEDPQALLEGVKNVLKEHADDDPSLAITGVP
IVTWPKKTPKNRAVGRPKGKLGPASAVKLATNRTTAGARRRRTRCRKCEACLRTECGECH
FCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEDGKFNLMLMEC
SICNEIIHPGCLKIKESEGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPG
SLLKEQKMNRDNKEGQEPAKRRSECEEVPRRRSDEHPKKVPPDGILRRKSDDVHLRRKRK
YEKPQELSGRKRASTLQTSPGSSSHLSPRPPLGSSLSPWWRSSLTYFQQQLKPGKEDKLF
RKKRRSWKNAEDRMALTNKPLRRFKQEPEDDLPEAPPKARESDHSRSSSPTAGPSTEGPE
GPEEKKKVKMRRKRRLPTKELSKELSKELNQEIQKTENSLANENHQPIKSEPESESEEPK
RPLGLCDRPHRFSKGLTGTPRELRHQLGPGLRSPPRVISRPPPSVSPPKCIQMERHVIRP
PPISPPPDSLPLDDGAAHVMHREVWMAVFSYLSHQDLCVCMQVCRTWNRWCCDKRLWTCI
DLNHCKSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPALRDLVLSGCSWIAVS
ALCSSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAGLDI
TDASLRLIIRHMPLLSKLHLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDLC
LSFFKRCGNICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagagaaagactctggaagaagattgcgcccgattgaccgccagagatacgac
gagaacgaggacttgtcggacgtggaggagattgtcagcgtccgcggcttcagcctggag
gagaagctgcgcagtcagctataccagggagactttgtgcgcgccatggagggcaaagat
ttcaactatgagtatgtgcagagagaagctctcagggttcccctgatatttcgagaaaag
gatggacttggtattaaaatgcctgaccctgatttcacagtccgagatgtcaaactccta
gtgggtagccggcggctggtggacgtgatggatgtgaacacccagaagggcacagagatg
agcatgtcccagtttgtgcggtactacgagacgcctgaggctcagcgggacaagctgtac
aatgtcatcagccttgagttcagccacaccaagctggagcacttggtcaagcgtccgact
gtggtagacctggtggactgggtggacaacatgtggccccagcacttgaaggagaagcag
acggaagcgaccaatgccattgcagagatgaagtatccaaaagtgaagaagtactgtctg
atgagcgtgaagggttgtttcactgacttccacattgacttcggaggcacttccgtttgg
taccatgttttccgtggtgggaagatcttttggctgattcctccaaccctgcacaatttg
gcactgtatgaggagtgggtgctgtcaggcaaacagagcgacatcttcctgggagaccgt
gtggagcgatgccaaagaattgagctgaaacaggggtacacatttttcatcccttctggt
tggatccatgccgtctacaccccggtagactctctggtattcggtggaaacatcctgcac
agcttcaacgtgcccatgcaactgcggatctacgagatagaggacagaactcgggtgcaa
cccaaattccgttaccccttctactatgagatgtgctggtatgtcttggagagatacgtg
tactgtgtgacccagaggtcccacctcacacaggaataccagagagaatcaatggttatt
gatgccccaagaaagcccagcatagacggcttctcatctgattcctggctggagatggag
gaggagtcctgtgagcagcagccccaggaggaggagaaggaggaagaagaagaggaagag
gaggaaggtgcagataaggcacccaagccacttgctgatggccctgtctcacccaccagc
acaccctccgaggaccaggaggcctctgggaagaagcccaaagcacctgccatgcggttc
ctcaaaaggactttgtctaatgagtcggaggacagcgtgaagtcttcggccgtgcccgta
gactaccccaagacacccaccggctcccctgccacagaggtctctgccaaatggacccac
ctcactgagtttgaactgaagggcctgaaggctctggtggagaaactggaatccctcccg
gaaaacaagaagtgtgtccccgacggcatcgaggacccccaggcactcctggagggcgtg
aagaatgtgctgaaggagcacgcagacgacgaccccagtctggccatcactggggtcccc
atagtcacttggccaaagaagactccaaagaaccgggcagttggccggcccaagggcaag
ctgggcccagcctccgccgtgaagttggccaccaaccggaccacggcgggagctcgccgg
cgccggacgcgatgccgcaagtgcgaggcctgcctgcggaccgagtgtggagagtgccac
ttctgcaaggacatgaagaagtttgggggccctgggcggatgaagcagagctgcatcatg
cggcagtgcatcgcgccagtgctgccccacactgccgtgtgcctagtgtgtggcgaggcg
gggaaggaagacaccgtggaagaggaggacggcaagtttaacctcatgctcatggagtgc
tctatctgcaatgaaatcatccaccctggatgccttaagattaaggaatcggagggcgtg
gtcaacgatgagcttccaaattgctgggagtgtcccaagtgtaaccatgccggcaagacc
gggaaagcctacaagcaaaagcgtggccctggcttcaagtatgcctccaacctgcctggc
tccctgctcaaggagcagaagatgaaccgggacaacaaggaagggcaggagcctgctaag
cggaggagcgagtgtgaggaggtgccccggcgcaggtcagacgagcaccctaagaaggtg
ccccctgatggcatcctgcgccgaaagtcagacgacgtgcacctaaggagaaaaaggaaa
tacgagaagccccaggagctgagtggccgcaagcgagcctcgacgcttcaaacgtccccc
ggttcctcctctcacctctcgccgaggccccctctaggcagcagcctcagcccttggtgg
agatccagtctcacttacttccagcagcagctaaaacctggcaaagaagataagcttttc
aggaaaaagcggcggtcctggaagaacgccgaggaccggatggctctcaccaacaagcct
cttaggcgcttcaagcaggaaccagaggacgatctgcctgaggcgccccccaaggcccgg
gagagcgaccactcccgctccagctcgccaacagcggggcccagcacagaggggccagag
ggccctgaggagaagaagaaggtgaagatgcgcaggaaacggaggctccccaccaaggag
ctgagcaaggagctgagcaaggagctgaaccaggagatccagaagacggagaacagcctg
gccaatgagaaccaccagcccatcaagtcagagcctgagagtgagagtgaggagcccaag
cggcccctggggctctgtgaccgcccccaccgcttcagcaaggggctcaccggcaccccc
cgggagctgcggcaccagctggggcccggcctgcgcagcccaccccgtgtcatctcccgg
ccccctccctccgtgtctccgcccaagtgcatccagatggagcgacatgtgatccggcca
ccccctataagccccccgcctgactcactgcccctggacgatggtgcagcccacgtcatg
cacagggaggtgtggatggccgtcttcagctacctcagccaccaagacctgtgtgtctgc
atgcaggtctgcaggacctggaaccgctggtgctgtgataagcggttatggacctgcatc
gacctaaaccactgcaagtccatcacacctctgatgctgagtggcatcatccggcggcag
cctgtctccctggacctcagctggacaaatatctccaagaaacagctgagctggcttatc
aaccggttgcctgcgctccgagacttggtgctgtcgggctgctcgtggatcgcagtctca
gccctctgtagttccagttgtccattgctccggaccctggatgtccagtgggtagaaggg
ctaaaggatgcccagatgcgggatctcctgtccccacccacagataacaggccaggtcag
atggacaatcggagcaagctccggaacattgtggagttgcgtctagcgggcctggacatc
acagatgcctccctgcggctcatcattcgccacatgcccctgctctccaagctccacctt
agttactgtaaccatgttactgaccagtccatcaacttgctcactgctgtgggcaccact
acccgggactccttaactgaaatcaacctgtcagactgtaataaggttactgacctgtgc
ctgtccttcttcaaacgctgtggaaatatctgtcacattgacctgaggtactgcaagcaa
gttaccaaggaaggctgtgagcagttcatagctgaaatgtctgtgagtgtccagttcggg
caagtggaagaaaaactcctgcaaaaactgagttag
DBGET
integrated database retrieval system
