Manis javanica (Malayan pangolin): 108392793
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Entry
108392793 CDS
T06054
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
mjv
Manis javanica (Malayan pangolin)
Brite
KEGG Orthology (KO) [BR:
mjv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mjv03036
]
108392793 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
mjv03400
]
108392793 (SMCHD1)
Chromosome and associated proteins [BR:
mjv03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
108392793 (SMCHD1)
DNA repair and recombination proteins [BR:
mjv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
108392793 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
IFT20
Motif
Other DBs
NCBI-GeneID:
108392793
NCBI-ProteinID:
XP_036874067
LinkDB
All DBs
Position
Unknown
AA seq
2002 aa
AA seq
DB search
MAAADDDGASVGTGEGCGDGDGCRTVYLFDRREKESELGDRAVQVEERSDYAAFRASVCQ
TLGILPEEKFVITTTSRKEITCDNFDETIKDGVTLYLLQSVNQLLLTATKERIDFLPHYD
TLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRRIQIKLLFDEVQGKPAVAV
IDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQA
VFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKESIYSGYIRNRKPSDSVHITNDD
ERFLHHLILEEKEKNSFTAVVITGVQPEHMQYLKNYFHLWTRQLAHIYHYYIHGPKGNEK
HTSKEVGPFNNIDIEISMFEKGKTPKIVNLREMQDDMQTLYINTAADSFEFKAHVEGDGV
VEGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFIIEKAARGKRPIFECFWNGRLIP
YTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLF
TRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTSFKGIITRPDLPSKKQGPWATYSAI
EWDGKIYKAGQLVKTIKTLPLFYGSIEKFFLYGDHDGEVYATGGEVQILMEPQALYDEKR
TVPIAKLDRTVAEKTVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEI
LNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENI
QKLGNYTLKLQVVLNESNADTYAGRPLPSKTIKFSVKEGKPEKFSFGLLDSPFRVGVPFN
IPLEFQDEFGHASQLGNDIQPVFEASGLSLHYEELTKGPNCIIRGVTAKGPVNSCQGKNF
NLKVILPGLKEDTQILKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVLDESDNITT
QPKLIVHCKFSGAPNLPVYVVDCSSSGTSILSGSAIQVQNIKKDQMLKAKIEIPSCKDVA
PVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGEREII
ITSALADKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVR
PLPDEPKHLKCELKGGKTVQMGQELQGEIVIIVTDQYGNQIQAFSPNSLSALGIAGIGLD
SSHLKTAFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDW
PELKESIPVINGRELQNPLTVQLCDQWDNPAPVPQVKISLLKPNNLKLTPSNQQHKTDER
GRANLGVFTVYAPRGLHNMQIRATYNKNIIDGPLIKLMILPDPEKPIRLNVKYDKDASFL
AGDVFTDFIVTIISEDDSIIKNINPARISMKMWQLSNSGNRQPTNAETFSCNKIKDDKED
GCFYFRDKAVPNKVGIYCIQFGFMMDKTNILNSEQIIVDVLPNQPVKLIPKYQPATPAVS
NVRSVASRTLVRDLHLNITDEYNNQTGIDLVGIVRATIKGPNEEDTDTPLFTGKVRTLEF
PFVKGSAEITSLVLAENSPGRDSTEYVIVFEPQLPTLSRTLKSYELPFMFYDDVKKQQQM
AALTREKDQLSKNIVMYKSLFEAGKQLLNEMKCQVEEAKLKEAQLRNELKTHNIDIPTTQ
QMPHIEALLKRKLSEQEELRKKPRRSCTLPNYTKGGGDVLGKIAHLAQIEDDRAAVVISW
HLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLYFKP
IGDPIFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRD
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPRQCLATGEQIDLLQQYRTAVAKLNTVI
EDLSRQSQYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSLRHPAKAEMIGCP
VPPKRARRETTRQNRTVTKTDV
NT seq
6009 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgcggacgacgacggcgcctcggtggggactggagagggctgcggagacggc
gacggctgcagaacagtgtacttgtttgaccggcgcgagaaagagtcagagctcggggac
cgtgctgtgcaggtcgaggagcgctcggattacgcggcgttccgcgcctccgtctgtcag
acgcttggcattctacctgaagagaagtttgttattacaacaacaagtaggaaagaaatt
acctgtgataatttcgatgaaactattaaagatggagtcactctgtatctgctacagtca
gtcaatcagttactactaacagctacaaaagaacgaattgacttcctacctcactatgac
acactggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttgcca
tttgctcttgcagaattgattgataattctttgtctgctacttctcgtaacactggtatt
agaagaatacagatcaaactgctttttgatgaagtgcaaggaaaacctgctgttgcggtg
atagataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtatagatta
tcaaaatttacaaggcaaggagactttgagagtgaccattcaggatatgttcgtccagta
ccagtgccacgcagtctaaatagtgatatttcctattttggtgttgggggcaagcaggct
gttttctttgttggacaatcagccagaatgataagcaaaccagcagactcacaagatgtt
catgagcttgtgctttcaaaagaggattttgagaagaaggagaaaaataaagagtcaata
tatagtggatatattagaaacagaaagccatctgattctgttcatattacaaatgatgat
gaaagatttctacatcatcttatcttagaggagaaggaaaaaaatagttttactgctgtg
gttatcacaggggtacaaccagaacacatgcagtacttgaaaaattatttccatctttgg
acaaggcagttagcgcatatttatcattactatattcatggcccaaagggaaatgaaaaa
catacatcaaaagaagttggacctttcaacaacattgatattgaaatttctatgtttgaa
aaagggaagacacctaagattgtcaacctgagggaaatgcaagatgacatgcagacgttg
tacataaacacagcagctgatagttttgagttcaaggctcatgttgaaggagatggtgta
gtggaagggattatccgctatcatcctttcctatatgatagagaaacttaccctgatgat
ccatgctttccatcaaaattaaaagatgaagatgatgatgacgattgtttcataattgag
aaagcagcaagagggaaaaggcctatttttgaatgtttttggaatggacgactaatacca
tatacatctgttgaggactttgactggtgtactcctcctaagaagagagggcttgcacca
attgagtgctacaatagaatatctggtgcattattcactaatgacaaattccaagtcagc
acaaataaactcacttttatggatcttgagctaaaattgaaagataagaacacccttttt
acaaggattttaaatggacaggagcagcgaatgaaaattgacagagaatttgctttatgg
ctgaaggactgtcatgaaaagtatgacaaacaaattaaatttacatctttcaaaggaata
attacacgtcctgatcttccttctaaaaagcaaggcccctgggcaacatactcagcaata
gagtgggatggaaaaatatacaaagcaggacagctggtcaagacgatcaagacacttcct
ctcttttatggaagcatagaaaagttttttctttatggtgatcatgatggagaagtgtat
gctacaggaggagaggttcaaattttaatggaacctcaggcattgtatgatgaaaaaaga
actgtgccaattgcaaagctggataggacagttgctgagaaaactgtaaaaaaatatgta
gaagatgaaatggcaaggcttcctgatagattgtcagtaacttggcctgaaggagatgaa
ttattgccaaatgagattaggcctgctggaacccccataggtgcattaagaattgaaata
ctgaataaaaaaggggaagcaatgcaaaagcttccaggaacaagtcatggagggtcaaag
aaacttctggttgagctcaaagttatactacactcctcaagtggaaataaagaaatcatt
tcacatattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatatt
caaaagttggggaattataccttgaaattacaagttgtattgaatgaaagtaatgcagac
acttatgcaggaagaccactaccatctaaaacaattaaattttctgttaaagagggtaag
ccagagaaattctcatttggtcttctggattctccttttcgtgttggagtgccgttcaat
atccccctggagtttcaggatgaatttggtcatgctagtcaactaggaaatgatattcag
ccagtttttgaagcaagtggtttatctttgcattatgaagagctaaccaaaggaccaaat
tgcataattcgaggtgttacagctaaaggccctgtgaactcttgtcaaggcaagaatttt
aatctgaaggttattctaccgggtttaaaagaagacacacagattttaaaaattagatta
ttaccaggtccccctcatcgattgaaagtgaaacctgattctgaaattttagttatagaa
aatggaacagctttcccatttcaggtagaagttttggatgaatcagacaatataacaaca
caaccaaaattgattgttcattgtaagttttcaggtgctccaaaccttcccgtctatgtt
gtggattgcagtagttctggaaccagtattttatcaggatctgcaatccaagttcagaac
attaaaaaagatcagatgcttaaagcaaaaattgaaatacctagttgtaaagatgtggca
cctgtggaaaagactattaaattgcttcctagtagccatgttgcaagattacagatattc
agtgtggaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattggatagca
ggcgatattatgcataatcttatttttcaaatgtatgatgaaggggaaagagaaatcatt
ataacatcagctttagcagataaaattaaagttaactggacacctgagattaacaaagaa
cacttgctacaagggctgcttcctgatgtacaagtgccaacatctgtaaaagatatgcgc
tattgccaggtttcattccaagacgatcatgtatctttggaaagtgcatttacagtaaga
ccactccctgatgaacctaaacatctaaaatgtgagttaaaaggagggaaaacagtacag
atgggccaagagcttcaaggggaaatagttataatagttacagatcagtatggaaatcag
attcaggcattttcaccaaattctttatctgccttgggaattgctgggattggacttgat
agttcacatttgaaaactgcttttcaggaaaatacacaaagtataagtgtaagaggcatc
aaatttattccaggtcctcctggaaataaggatctttgttttacgtggcgtgagttttct
gactttattcgagtgcagctaatttctggaccaccagctaaacttctccttatagactgg
ccggaattaaaggagtccattccagtgattaatggaagagaattacagaatcctctcact
gttcaactttgtgaccagtgggataatccagcacctgtaccacaggttaaaataagtctt
ctaaaacctaacaatttaaagctgactccttcaaaccaacagcataaaacagatgaaagg
ggcagggctaatttgggagtattcactgtttatgcccctagaggactacacaatatgcaa
attagagccacgtataacaagaatatcatagatggacctttaattaagttgatgattctt
ccagacccagaaaaacctattcgtctcaatgttaaatatgacaaagatgcttccttttta
gcaggggatgtttttactgattttattgttacgattatttctgaagatgacagtatcatt
aaaaatattaatccagcacgtatttccatgaaaatgtggcagctgtctaacagtggaaac
cgacaaccaacaaatgcagaaacatttagttgtaataaaataaaagatgacaaggaggat
ggctgcttctacttcagggataaagcagttcctaacaaagtggggatatattgtatccag
tttggttttatgatggataaaacaaatattcttaacagtgaacagattatagttgatgtt
ctgcctaatcaacctgtgaagttaattcctaaatatcagccggctacaccagctgtttca
aatgtccgctcagttgccagtaggaccttggtcagagatctacatcttaatatcacggat
gaatacaacaatcaaactggaatagatttggttggtattgtaagagctaccattaaaggt
cctaatgaagaagatactgatacaccactctttactgggaaagttagaacacttgaattt
ccctttgtcaaaggttcagctgaaatcacgagtctggtgctggcagaaaatagtcctgga
agagatagcactgaatatgttattgtatttgagcctcagctgccaacgttatcaaggaca
ctaaaatcatatgaactaccatttatgttttatgatgatgttaagaagcagcaacaaatg
gcagcacttacaagagagaaagaccaattatctaagaatattgtaatgtacaaaagttta
tttgaagccggcaaacagcttcttaatgaaatgaagtgccaagtggaagaagcaaaatta
aaagaggcccagttgcgaaatgaactaaaaacacataatattgacattcctaccacacag
cagatgccacacattgaagcacttttgaaaagaaagctatcagaacaggaagaacttagg
aagaaaccgagaagatcatgtactcttccaaactatactaaaggtggtggagatgttttg
ggaaagattgcacacctggcacaaattgaagatgatagagctgctgtggttatttcttgg
catctggcaagtgacatggactgtgtagtcaccctgaccactgacgctgcacgtcgcatc
tatgatgaaacccagggtcgccagcaggtgttgccccttgattctatttataagaagact
cttccagattggaaaagacctctacctcattaccgaaatggaaaattgtattttaaaccc
attggagatccaatctttgcccgagatttgttaacatttccagataacatagaacattgt
gaaacagtatttggtatgctgttaggagacaccattattttggataatttggatgctgcc
aatcattataggaaagaggttgttaaaattacgcactgccctacactgctcaccagagat
ggagatcgcattagaagtaacggcaagttcgggggtcttcagaataaagctcctccgatg
gataagcttcggggaatggtattcggagcgccggtgccaaggcagtgcctggccacaggg
gagcaaatagatcttcttcagcagtaccgcactgctgtggccaagctgaacactgtgatc
gaggacctcagccgtcagtcccagtaccttcacacccctgatatgaagaagaagaaacaa
gaacttgatgaacaagagaaaaatctgaaactaatagaacaaaaactaggtatgactccc
acacgtaagtgtaacgactctctgcgtcacccagcaaaggctgaaatgataggttgtcca
gttcctcctaaaagagcgagaagagaaacgacaagacaaaataggactgtaaccaaaaca
gatgtgtga
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integrated database retrieval system
