Manis javanica (Malayan pangolin): 108400836
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Entry
108400836 CDS
T06054
Symbol
RIGI
Name
(RefSeq) antiviral innate immune response receptor RIG-I isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
mjv
Manis javanica (Malayan pangolin)
Pathway
mjv04064
NF-kappa B signaling pathway
mjv04622
RIG-I-like receptor signaling pathway
mjv04623
Cytosolic DNA-sensing pathway
mjv05160
Hepatitis C
mjv05161
Hepatitis B
mjv05162
Measles
mjv05164
Influenza A
mjv05168
Herpes simplex virus 1 infection
mjv05169
Epstein-Barr virus infection
mjv05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
mjv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
108400836 (RIGI)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
108400836 (RIGI)
04623 Cytosolic DNA-sensing pathway
108400836 (RIGI)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
108400836 (RIGI)
05160 Hepatitis C
108400836 (RIGI)
05171 Coronavirus disease - COVID-19
108400836 (RIGI)
05164 Influenza A
108400836 (RIGI)
05162 Measles
108400836 (RIGI)
05168 Herpes simplex virus 1 infection
108400836 (RIGI)
05169 Epstein-Barr virus infection
108400836 (RIGI)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
mjv04054
]
108400836 (RIGI)
Enzymes [BR:
mjv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108400836 (RIGI)
Pattern recognition receptors [BR:
mjv04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
108400836 (RIGI)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_22
CCDC85
AAA_25
RUNDC1
OrfA
Motif
Other DBs
NCBI-GeneID:
108400836
NCBI-ProteinID:
XP_036865671
LinkDB
All DBs
Position
2:37580895..37647435
Genome browser
AA seq
928 aa
AA seq
DB search
MTAEQRRNLHAFGHYVRRTLDPTYILSYMAPWFSEDQLQYIQAEKNNKGAMEAASLFLRF
LLELQEEGWFRGFLDALHQAGYSGLYEAIENWDFQKIEELEDYRLLLMRLQPEFKIRINP
KDILPEISECLISQEYEEILQVCSNKGSMAGAEKMVECLLRSDKGNWPKALKLALEKEES
KFSELWIVEKGAEDVEIKESEDDEVETDVQIFYKEEPECQNLSQNSCSPSGMSQTYSPMK
PRNYQLELTLPAKEGKNAIICAPTGCGKTFVSLLICEHHLKKFPEGQKGKVVFFAIQLPV
YEQQKSVFSQYFERLGYKVAGISGATSENVSVEQTVENNDIIILTPQILVNSLKDGTVPS
LSVFTLMIFDECHNTSKNHPYNMIMFNYLDQKFGRSSDPLPQVIGLTASVGVGDAKNTNE
TIEYICKLCASLDTSVIATVKENVEELEEIVYKPQKVFRKVESRTTDRFKCIISQLMWET
ESLAKSVFDEIGTIIPEKLSQIQNRDFGTQKYEQWIVAVQKMCMVFQMPDKDEESRICKA
LFLYTSHLRKYNDALIINEHARMKDALYYLKEFYNNVRAAGFDATEQHLTQRFEEKLQEL
ESVSMDPRSENPKLKDLCFILQEEYHLNPESRTILFVKTRALVDALKKWIEENSKLSFLK
PGILTGRCKTDQNLGMTLPAQKCVLDAFRANGDNKMLIATSVADEGLDIAHCNLVILYEY
VGSVIKMIQTRGRGRARGSKCFLVTSNADVIEKEKINICKEKMMNDSILRLQSWDEAVFK
EKVCKIQSHEKFIRDSQEKVKPVPDKKNKKLLCKKCKAFACYTADIRVVEECHYTVVGDA
FRTCCITKLHPKPKSFGNFEKTAKIFCARQNCNQDWGIYMKYKAFEIPVIKIESFVVEDV
ATGAQKLYAKWRDFHFEKMPFGPAEMSK
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgacggcggagcagcggaggaatctgcacgccttcggtcactatgtcaggaggacgctg
gaccctacctacatcctgagctacatggccccctggtttagtgaggatcagctccagtat
attcaggctgagaaaaacaacaagggtgcaatggaggctgcctcgctttttctgaggttc
ctattggagctccaagaggaaggctggttccgtggctttttggatgcccttcaccaagca
ggttattctgggctttatgaagccattgaaaattgggatttccaaaaaatcgaagaattg
gaagactatcgattgcttttaatgcgtttacaaccagaatttaaaatcagaattaatcca
aaagatatccttcctgaaatatctgaatgtttaattagtcaggaatatgaagaaattcta
caggtttgttccaacaaggggtcgatggcaggtgcagagaaaatggttgaatgccttctc
agatcagacaagggaaactggcccaaagctttgaaacttgctttggagaaagaagagagc
aagttcagtgaactatggattgtagagaaaggtgcagaagatgttgaaatcaaagagtct
gaggatgatgaagtggaaaccgatgtgcagattttttacaaggaagaaccagaatgccag
aatcttagtcagaattcatgttcaccttcaggaatgtctcagacttacagcccaatgaag
ccaagaaattaccaactagaactcactttgcctgctaaggaaggaaaaaatgcaataata
tgtgctccaactggttgtggaaaaacctttgtttcacttcttatatgtgaacatcatctt
aaaaaatttccagaaggacaaaaggggaaggttgttttttttgctattcaactcccagta
tatgaacagcagaaatccgtgttctcacaatattttgaaagacttgggtacaaagttgca
ggcatttctggagcaacatctgagaatgtctcagtggaacagactgttgagaacaatgat
atcatcattttaactccacagattcttgtgaacagccttaaagatgggactgtcccatca
ctctctgtctttactttgatgatatttgatgaatgccacaacaccagtaaaaaccatcct
tataatatgatcatgtttaattatctagatcagaaatttggaagatcttcagacccactg
ccccaggtcattgggctgacggcatcagttggcgttggggatgccaaaaacacaaatgaa
accatagagtatatctgcaaactgtgtgcttcccttgacacatcagtgatagcaacagtc
aaagaaaacgtggaagaactggaggaaatagtttataaaccccagaaagttttcaggaaa
gtggaatcacggactactgacagatttaaatgcatcatatctcagctgatgtgggagaca
gaaagtctggcaaagagtgtctttgatgaaattggtaccataattcctgaaaaattatct
caaattcaaaatagggattttggaacacagaaatatgaacaatggattgttgcagttcag
aaaatgtgcatggtgtttcagatgccagacaaagatgaagagagcaggatttgtaaagca
ttgtttttgtatacttcacatttgcggaaatataacgatgctctcattatcaatgagcat
gcacgaatgaaagatgctctgtattacttgaaagagttctacaataatgtccgagcagca
ggatttgatgcaacggagcaacatctcacgcagagatttgaagaaaagttgcaggaacta
gaaagtgtttccatggatcccaggagtgagaaccctaaacttaaagatctctgcttcatc
ttgcaagaggagtaccacttaaacccagagagtagaaccattctgtttgtgaaaaccaga
gcacttgtggatgctttaaagaaatggattgaagaaaattctaaactcagctttctaaaa
cctggcatattgactggacgttgcaaaacagatcagaacctaggaatgaccctcccagcg
cagaagtgtgtgttggatgcattcagagccaatggagataacaagatgctgatcgccacc
tcagtagctgatgaaggactcgacattgctcattgcaatctggtcattctgtatgagtat
gtgggcagtgtcatcaaaatgatccaaaccagaggcagaggaagagcaagaggtagcaag
tgctttcttgtgactagtaatgctgatgtaattgaaaaagaaaaaataaacatatgcaaa
gaaaaaatgatgaatgactctattttacgccttcagtcatgggatgaagcagtatttaaa
gaaaaggtttgcaagatacaaagtcatgaaaaattcatcagggatagtcaagaaaaggta
aaacctgtacctgataagaaaaataaaaaactgctctgcaaaaagtgcaaagcttttgca
tgttatacagctgatataagagtggtggaggaatgccattacactgtggttggagatgct
tttaggacatgctgtataactaaattacaccccaaaccaaagagctttgggaattttgag
aagacagcaaagatcttctgtgccagacagaactgcaaccaagactggggaatctatatg
aagtacaaggcatttgaaattccagttataaaaattgaaagttttgtggtggaagatgtt
gcaactggtgctcagaaactgtatgcaaagtggagagactttcattttgagaagatgcca
tttggccctgcagaaatgtccaaatga
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integrated database retrieval system
