Mycobacterium kokjensenii: MU0083_002544
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Entry
MU0083_002544 CDS
T10822
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mkk Mycobacterium kokjensenii
Pathway
mkk03030
DNA replication
mkk03410
Base excision repair
mkk03420
Nucleotide excision repair
mkk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mkk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MU0083_002544 (ligA)
03410 Base excision repair
MU0083_002544 (ligA)
03420 Nucleotide excision repair
MU0083_002544 (ligA)
03430 Mismatch repair
MU0083_002544 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mkk03032
]
MU0083_002544 (ligA)
03400 DNA repair and recombination proteins [BR:
mkk03400
]
MU0083_002544 (ligA)
Enzymes [BR:
mkk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MU0083_002544 (ligA)
DNA replication proteins [BR:
mkk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MU0083_002544 (ligA)
DNA repair and recombination proteins [BR:
mkk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MU0083_002544 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MU0083_002544 (ligA)
MMR (mismatch excision repair)
DNA ligase
MU0083_002544 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MU0083_002544 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
CAJ1500887
LinkDB
All DBs
Position
1:complement(2726807..2728897)
Genome browser
AA seq
696 aa
AA seq
DB search
MSPEPDSVPPELRRQWHDLAEEVREHQFRYYIKDAPVITDGDFDQLFNALLALEDQHPEL
RTADSPTQLVGGAGFTTEFHPSEHLERMLSLEDVFSADELTAWGGRVIGEIGGDTAYLCE
LKVDGVALGLVYRDGRLHSGATRGDGRVGEDVTLNARTIVDVPEYLTPHTDFPIPAVLEV
RGEVYFRLEDFETLNAGLVEEGKPPFANPRNSAAGSLRQKNPAVTARRNLRMVCHGLGYT
EGFNPDTLHDAYLAMKAWGLPVSTHTSRVEGMAAVAEKITYWGEHRHDVEHEIDGVVVKV
DDRSLQRRLGATSRVPRWAVAYKYPPEEAQTKLLDIKVGVGRTGRVTPYADMTPVKVAGS
TVAQATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGTEREFIMPTTCPEC
GTELAPAKEADVDIRCPNSRYCPAQLRERVFHVAGRGAFDIEALGYEAATALLTAGVIAD
EGDLFTLTEEDLLRTDLFTTQKGVLSKNGQALLTNLDKAKAQPLWRVLVALSIRHVGPTA
ARALATEFGELDAITGASTEQLAAVEGVGPTIAAAVTEWFDVDWHRAIVDKWRDAGVRMA
DERDASIERTLEGLSIVVTGSLTGFSRDQAKEAIIVRGGKAAGSVSKKTAYVVAGDAPGS
KYDKAVELGVPILDEDGFRALLANGPDVSADSGDPS
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
gtgagcccagagcccgacagtgtgcccccggaactccgccgacagtggcatgacctggcg
gaggaagtacgcgagcatcagttccgctactacatcaaagacgcgccggtcatcaccgac
ggcgacttcgaccaactgttcaacgcgctgctcgcgctggaggaccagcaccccgaactg
cgcaccgccgactcgccgacccaactggtgggcggtgccgggttcaccaccgagttccac
ccgtcggagcatctggagcggatgctgtcactggaggacgtgttctccgccgacgaactg
accgcctggggcggccgggtcatcggtgagatcggcggcgacaccgcctacctgtgcgaa
ctcaaggtcgacggggtggcgctgggcctggtctaccgcgacggccggttgcacagcggg
gccacccgcggcgacggccgggtcggcgaagacgtgacgctgaacgcgcgcaccatcgtc
gacgtccccgaatacctcaccccccacaccgatttcccgattccggccgtgttggaggtg
cgcggcgaggtgtacttccggctggaggatttcgaaaccctcaacgccggcctggtggaa
gaggggaaaccgccgttcgccaatccgcgcaacagtgcggccggttcgctgcgacagaag
aacccggcggtcaccgctcggcgcaatctgcggatggtctgccacggtctcggctacacc
gagggcttcaacccggacacgctgcacgacgcctacctggcgatgaaggcctggggattg
ccggtctccacccacaccagccgggtcgagggcatggccgccgtcgccgagaagatcacc
tactggggtgagcaccgccacgacgtcgagcatgaaatcgacggcgtggtcgtcaaagtc
gacgaccggagcctgcaacgccggctcggcgcgacctcccgggtgccgcgctgggcggtg
gcctacaagtacccgccggaggaggcacagaccaaactgctggacatcaaggtgggtgtc
ggccgcaccgggcgggtcaccccctacgccgacatgactccggtcaaggtcgccggatcc
acggtggcacaggcgactctgcacaacgcctcggaggtcaaacgcaaaggtgtgttgatc
ggtgacaccgtggtgatccgcaaggccggcgacgtcattcccgaggtgctcggcccggtc
gtcgacctgcgcgacggcaccgaacgcgaattcatcatgcccacaacatgtcccgaatgc
ggcaccgaactcgccccggccaaggaggccgatgtcgacatccgctgccccaactctcgg
tactgcccggcgcagctgcgcgagcgggtgtttcacgtcgccggacgcggtgccttcgac
atcgaagccctcggctacgaagcggcgaccgcgttactgaccgccggcgtcatcgccgat
gaaggcgacctgttcaccctcaccgaagaggacctgctgcgcaccgacctgttcaccacg
cagaagggcgtgctgtccaagaacggccaagcgctgctgaccaatctggacaaggccaag
gcccagccgctgtggcgggtgctggtcgcgctgtcgatccgccacgtcggaccgaccgcg
gcgcgcgcgctggcaacggaattcggtgaactcgacgccatcaccggggcatccaccgag
cagctggccgccgtcgagggggtgggacccaccatcgccgccgcggtcaccgaatggttc
gacgtcgactggcaccgggccatcgtcgacaagtggcgcgacgccggggtgcggatggcc
gatgagcgcgacgcgagcatcgaacgcaccctggaggggttgagcatcgtcgtcaccggc
tcgctgaccggattctcccgcgaccaggccaaggaggcgatcatcgtccgtggcggcaag
gccgccggttcggtgtcgaagaagaccgcctacgtggtggccggcgatgcgcccggctcc
aagtacgacaaggccgtcgagctcggggtgccgattctcgacgaggacgggttccgggcg
ttgctggcgaacgggcccgacgtctccgccgattccggcgatccgtcctag
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