Mycobacterium sp. KMS: Mkms_1927
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Entry
Mkms_1927 CDS
T00442
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mkm
Mycobacterium sp. KMS
Pathway
mkm03030
DNA replication
mkm03410
Base excision repair
mkm03420
Nucleotide excision repair
mkm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mkm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Mkms_1927
03410 Base excision repair
Mkms_1927
03420 Nucleotide excision repair
Mkms_1927
03430 Mismatch repair
Mkms_1927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mkm03032
]
Mkms_1927
03400 DNA repair and recombination proteins [BR:
mkm03400
]
Mkms_1927
Enzymes [BR:
mkm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Mkms_1927
DNA replication proteins [BR:
mkm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Mkms_1927
DNA repair and recombination proteins [BR:
mkm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Mkms_1927
NER (nucleotide excision repair)
GGR (global genome repair) factors
Mkms_1927
MMR (mismatch excision repair)
DNA ligase
Mkms_1927
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Mkms_1927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
Bac_small_YrzI
Motif
Other DBs
NCBI-ProteinID:
ABL91126
UniProt:
A1UE68
LinkDB
All DBs
Position
2045051..2047156
Genome browser
AA seq
701 aa
AA seq
DB search
MSAKSTPDAGPQEQATEAEAELRHRWQALADEVRDHQFRYYVRDAPVISDADFDKLFQQL
EALEAEHPELRAPDSPTQLVGGAGFATDFTPAEHLERMLSLDDVFNVDELTAWSSRVRAE
VGDDAAYLCELKVDGLALALVYRDGRLERAATRGDGRVGEDVTLNARTLDDVPERLTPSD
EFPHPAVLEVRGEVFFRVADFEALNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRPL
RMVCHGIGYTEGFSPTSLHEAYGALRAWGLPVSDHTTRVQGMDAVRERIAYWGEHRHDIE
HEIDGVVVKLDQIALQRRLGATSRAPRWAVAYKYPPEEAQTKLLDIRVNVGRTGRVTPFA
YMEPVKVAGSTVGLATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGTERE
FVMPTHCPECGTELAPAKEGDADIRCPNSRTCPAQLRERVFHVAGRGAFDIEGLGYEAAI
ALLQAGVITDEGDLFTLTEDDLLRTELFTTKGGAVSANGRRLLANLGKAKAQPLWRVLVA
LSIRHVGPTAARALATEFGSLDAIIEASEDQLAAVEGVGPTIAAAVKEWFTVDWHCAIVE
KWRAAGVRMADERDASIARTLEGLSIVVTGSLAGFSRDEAKEAIIARGGKAAGSVSKKTA
YVVAGDSPGSKYDKAIDLGVPVLDEDGFRNLLENGPQAPEG
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcgaagtcgaccccggatgccgggccgcaggagcaggccaccgaagccgaggcc
gaactgcgccaccgttggcaggcgctcgccgacgaggtccgcgaccaccagttccggtac
tacgtgcgcgacgccccggtcatctccgacgccgacttcgacaagctcttccagcaactc
gaagcgctggaggccgaacatcccgagctgcgcgccccggattcgccgacccaactggtg
ggcggcgccgggttcgccaccgacttcaccccggccgaacatctggagcggatgctgagc
ctcgacgacgtcttcaacgtcgacgagctgaccgcctggtcgagccgggtgcgcgccgag
gtcggcgacgatgcggcgtatctgtgtgagctcaaggtcgacggcctggcgctggcgctg
gtgtatcgggacggacggctggaacgcgccgcgacgcgcggtgacggccgggtcggcgag
gacgtcacgctcaacgcccgcaccctcgacgacgtgcccgaacggctgaccccgtccgac
gagttcccccacccggcggtgctggaggtccgcggtgaggtgttcttccgggtcgccgac
ttcgaggcgctcaacgcggggctggtcgccgaggggaaaccgccgttcgccaacccgcgg
aacagcgccgccggctcgttgcggcagaagaatccggcggtcacggcgcgccgcccgctg
cggatggtgtgtcacgggatcggctacacggaggggttcagtccgaccagcctgcacgag
gcgtacggagcgctgcgggcctgggggctgccggtgtccgaccacaccacccgggtgcag
ggtatggacgcggtgcgggagcgcatcgcgtactggggcgagcaccgtcatgacatcgaa
cacgagatcgacggtgtggtcgtcaaactcgaccagatcgctttgcagcgccggctcggg
gcgacctcgcgcgcgccacggtgggcggtggcctacaagtatccgcccgaggaggcgcag
accaagctgctcgacatccgggtcaacgtcggccgcaccggccgcgtgacgccgttcgcc
tacatggaaccggtgaaggtggccggctccaccgtgggcctggcgacgctgcacaacgcc
tcggaggtcaaacgcaagggtgtgctcatcggcgacaccgtggtgatccgcaaggccggt
gacgtcatccccgaggtgctggggcccgtcgtcgatctgcgcgacggcaccgaacgcgag
ttcgtgatgccgacgcactgccccgaatgcggcaccgaactcgccccggccaaggagggc
gacgccgacatccgctgcccgaactcgcgcacgtgtccggcgcagttgcgggagcgggtg
ttccacgtcgccgggcgcggcgccttcgacatcgagggtctcgggtacgaggcggccatc
gcgctgctgcaggccggtgtcatcaccgacgagggcgacctgttcacgctgaccgaggac
gacctgctgcgcaccgagctgttcaccacgaagggtggcgccgtatccgccaacggccgc
cggctgctggccaacctcggcaaggccaaggcgcagccgctgtggcgggtgctggtcgcg
ttgtccatccgccatgtcgggccgacggcggcgcgggcgctggccaccgaattcggcagt
ctcgacgcgatcatcgaggcctccgaggaccagctcgccgcggtggagggtgtggggccg
acgatcgccgccgcggtcaaggagtggttcacggtcgactggcactgcgcgatcgtcgag
aagtggcgcgccgcgggggtgcggatggccgacgaacgcgacgccagcatcgcccgcacg
ctggaggggttgtcgatcgtcgtcacagggtcgctggccgggttctcccgcgacgaggcg
aaggaggcgatcatcgcccgcgggggcaaggcggccggttcggtgtcgaagaagaccgcg
tacgtggtcgcgggcgactcaccgggttccaagtacgacaaggcgatcgatctcggtgtg
ccggtgctcgacgaggacggattccggaacctgctggagaacgggccgcaggcgccggag
ggctag
DBGET
integrated database retrieval system
