Myxococcus landrumensis: JY572_35865
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Entry
JY572_35865 CDS
T09993
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mlan
Myxococcus landrumensis
Pathway
mlan03030
DNA replication
mlan03410
Base excision repair
mlan03420
Nucleotide excision repair
mlan03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mlan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JY572_35865 (ligA)
03410 Base excision repair
JY572_35865 (ligA)
03420 Nucleotide excision repair
JY572_35865 (ligA)
03430 Mismatch repair
JY572_35865 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mlan03032
]
JY572_35865 (ligA)
03400 DNA repair and recombination proteins [BR:
mlan03400
]
JY572_35865 (ligA)
Enzymes [BR:
mlan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JY572_35865 (ligA)
DNA replication proteins [BR:
mlan03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JY572_35865 (ligA)
DNA repair and recombination proteins [BR:
mlan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JY572_35865 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JY572_35865 (ligA)
MMR (mismatch excision repair)
DNA ligase
JY572_35865 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JY572_35865 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
RNA_pol_A_CTD
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QSQ13652
LinkDB
All DBs
Position
complement(9158368..9160395)
Genome browser
AA seq
675 aa
AA seq
DB search
MDDFKTAEARARELRRELAHHNHRYYVLDSPEISDAQYDTLMRELQGLEEKHPNLLTPDS
PTQRVGGKAADEFGEVVHRAPMLSLANIFNDEGLGEFDERVRKLLGTPSVTYVCEPKLDG
LAIALRYEKGVFVQGATRGDGTTGEDVTGNLRTIRSLPMELFPLDNKTPVPALLEVRGEV
FIRKADFKKLNDKREEEGEPLFANPRNAAAGSLRQLDPKETAARPLSVYLYECLATEGVP
AFKSHTEKLEYLKSLGLPTNQAVRAEGIDGVRQSYDNALKGRHELPFEVDGMVVKVDDED
QRKRLGQVSKSPRWAVAYKFPPEEESTEVLDIGIQVGRTGALTPVAHLKPVKVGGVTVAR
ATLHNEDEMRRKDVRKGDTVFVRRAGDVIPEIVSTVLSKRPQDSQPFEFPKHCPVCGAVA
TKDEDGAVIRCTGASCPAQLVEKIRHFASRLAMDIEGLGDKLASQLVATGTVKTFADLYG
ITKQKLLTLERMGDKSAENLLESLERSKGTTQRRFLYALGIRHVGDATAKALAEAFPKAS
ELFTASLEDISRVKDVGPVMAQVIHTFFQEPQNREAILALLNAGVSPAPPQVATGGPFVG
KTVVLTGSMTGMTREQAKEEVERRGGKVAGSVSRKTDFVVAGEDAGSKLKKAQELGVRIL
DEQAFLQLLQPDARG
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
gtggacgacttcaagaccgccgaagcccgagcccgcgagctccgccgtgagctggcccac
cacaaccaccgctactacgtgctcgactcgccggagatcagcgacgcgcaatacgacacg
ctgatgcgcgagctgcaggggctggaagagaagcaccccaacctgctgacgccggactcc
cccacccaacgcgtgggaggcaaggcggccgacgagtttggcgaggtggtccaccgcgcg
cccatgctctcgctcgccaacatcttcaacgacgagggactcggcgagttcgacgagcgc
gtgcgcaagctgctgggcaccccctccgtcacgtacgtgtgcgagcccaagctggacggc
ctggccatcgccctgcgctacgagaagggcgtcttcgtccagggcgccacccgaggcgac
ggcaccacgggcgaggacgtcaccggcaacctgcgcaccatccgcagcctgcccatggag
ctgttccccctcgacaacaagacgccggtgccggcgctgctcgaggtgcgcggcgaggtc
ttcatccgcaaggcggacttcaagaagctcaacgacaagcgcgaggaggaaggtgagccg
ctcttcgccaacccccgcaacgcggcggcgggaagcttgcgccagttggacccgaaggag
acggccgcgcgccccctctcggtgtacctgtacgagtgcctcgccaccgagggcgtgccc
gcgttcaagtcccacaccgagaagctggagtacttgaagtccctgggcctgcccaccaac
caggccgtgcgcgcggagggcatcgacggcgtccgccagtcctatgacaatgccttgaag
ggccggcacgagctgcccttcgaagtcgacggcatggtggtgaaggtggatgacgaggac
cagcgcaagcggctgggccaggtctccaagagcccccgctgggcggtggcctacaagttc
ccaccggaggaggagtccacggaggtgctggacatcggcatccaggtgggccgcaccggc
gcgctgacgcccgtggcacacctgaagcccgtcaaggtgggcggcgtcacggtggcgcgc
gccacgctgcacaacgaagacgagatgcgccgcaaggacgtgcgcaagggagacaccgtc
ttcgtgcgccgcgccggagacgtgattccggagattgtctccacggtcctctccaagcgg
ccccaggactcccagcccttcgagttccccaagcactgccccgtctgcggcgcggtcgcc
acgaaggacgaggacggcgccgtcatccgctgcacgggcgcgtcctgccccgcgcagctg
gtggagaagattcgccacttcgccagccgtctcgcgatggacatcgagggcctgggcgac
aagctggcctcgcagctggtggccaccggcaccgtgaagaccttcgcggacctgtacggc
atcaccaagcagaagctcctgacgctcgagcgcatgggcgacaagagcgcggagaacctg
ctggagtccctggagcgctccaagggcaccacccagcgccgcttcctctacgcgctgggc
atccgccacgtgggagacgccaccgccaaggccctggcggaggccttcccgaaagcaagc
gagctgttcaccgcgtcgctggaagacatctctcgcgtcaaggacgtgggccccgtcatg
gcccaggtcatccacaccttcttccaggagccccagaaccgggaggccatcctcgccctg
ctcaacgccggggtctcccccgccccgccccaggtggccaccggtgggccgtttgttggc
aagacggtggtgctcaccggctcgatgacaggtatgactcgggagcaggccaaggaagaa
gtggagcggcgtggcgggaaggtggccggaagtgtctcgcgcaagaccgatttcgtggtg
gccggggaggatgccggcagcaagctgaagaaggcgcaggaactcggagtaagaatcctg
gacgagcaggcgttcctgcagttgttgcagccggacgccagagggtga
DBGET
integrated database retrieval system
