Microvirga lotononidis: U0023_01990
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Entry
U0023_01990 CDS
T09656
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mld
Microvirga lotononidis
Pathway
mld03030
DNA replication
mld03410
Base excision repair
mld03420
Nucleotide excision repair
mld03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mld00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U0023_01990 (ligA)
03410 Base excision repair
U0023_01990 (ligA)
03420 Nucleotide excision repair
U0023_01990 (ligA)
03430 Mismatch repair
U0023_01990 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mld03032
]
U0023_01990 (ligA)
03400 DNA repair and recombination proteins [BR:
mld03400
]
U0023_01990 (ligA)
Enzymes [BR:
mld01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
U0023_01990 (ligA)
DNA replication proteins [BR:
mld03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
U0023_01990 (ligA)
DNA repair and recombination proteins [BR:
mld03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
U0023_01990 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
U0023_01990 (ligA)
MMR (mismatch excision repair)
DNA ligase
U0023_01990 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
U0023_01990 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
WQO27903
LinkDB
All DBs
Position
complement(451019..453178)
Genome browser
AA seq
719 aa
AA seq
DB search
MPPRSTSSETPVDHLTPDEARIEHERLGAEIKEHDRRYYEEDAPSVSDAEYDALRQRYEA
LEDQFPELKTPESLTQKVGSKVSEKFGKIRHRVPMLSLANGFADEEVEEFVERIRRFLQW
KADAPLAFTAEPKIDGLSLSLRYEGGRLVSAATRGDGAVGEDVTNNARTVGDIPHRLKGS
TVPEIFEVRGEVYLSHEDFAAINARQEAAGKALFANPRNAAAGSLRQLDPAITASRPLRF
FAYAWGEVSEMPADTQHGMMECFKSFGLKVNPLTRRCTSVAEMLEHYHAIETDRANLGYD
IDGVVYKVDDLNLQQRLGFVSRSPRWALAHKFPAQKAVTVLEDIEINVGRTGSLNPIARL
KPVTVGGVVVSNATLHNEDYIKGIGGNGEKIRNGIDIRIGDTVVINRAGDVIPKVLDVVL
EKRPADAKPYEFPTTCPACGSHAVREVNPRTGKEDAVRRCTGGLICPAQARERLKHFVSR
NAFDIEGMGEQRIDEFYEEGLVQRPQDIFTLQARNARSLKRLENREGWGETSARNLFAAI
EARRSITLNRFVFALGIPHIGETSARLLARHFGTFEHLRETAKAAADATSEAHTELTAIG
GIGPVVAEAVVEFFKEQHNEEMLDALLAQVTVEPMEAPAAANSPVAGKTVVFTGSLEQMT
REEAKAMAERLGAKVAGSVSKKTDIVVAGPGAGSKLAKAAELGLQVMDEDGWFALVGRK
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgcccccacgcagcacatcctccgagacccccgtcgaccacctgacgcccgatgaggcc
cggatcgagcacgagaggctcggcgccgagatcaaggagcacgacaggcgctattacgaa
gaggatgcgccgagcgtctcggatgccgagtacgacgccctgcgccagcgctacgaggcg
ctggaggaccagttccccgagctgaagacgcccgagagcctgacccagaaggtcgggtcc
aaggtctcggaaaagttcggcaagatccgccaccgcgtgccgatgctctcgctcgccaac
ggcttcgccgacgaggaggtggaggaattcgtggagcgcatccgccgcttcctgcaatgg
aaggccgatgcgccgctggccttcacggccgagccgaagatcgacggtctgtccctgagc
ctgcgctacgagggcggaaggctcgtgtccgccgctacgcgcggcgacggcgcggtgggc
gaggacgtgaccaacaacgcccgcacggtgggcgacattccgcaccggctcaagggatcg
accgttcccgagatcttcgaggtgcgcggcgaggtctatctctcgcacgaggatttcgcc
gccatcaacgcgcgccaggaggccgccggaaaggcgctcttcgccaatccgcgcaacgcg
gcggccggtagcctgcgccagctcgatccggcgatcaccgcctcgcgtcccttgcgcttc
ttcgcctatgcctggggcgaggtgagcgagatgccggcggacacgcaacacggcatgatg
gagtgcttcaagagcttcggcctgaaggtcaatccgctcacccgacgctgcacgagcgtc
gcggagatgctcgagcattatcatgccatcgagaccgaccgcgccaatctcggctacgac
atcgacggcgtcgtctacaaggtcgacgatctgaatcttcagcagcgcctcggtttcgtg
tcgcgctcgccgcgctgggcgctcgcacacaagttcccggcgcagaaggccgtgacggtg
ctcgaagacatcgagatcaatgtcggccgtaccggctcgctcaatcccatcgcgcgcctg
aagcccgtcaccgtcggcggcgtcgtcgtgtccaacgcgaccctgcacaacgaggattac
atcaagggcatcggcggcaacggcgagaagatccgcaatgggatcgatatccgcatcggc
gatacggtcgtcatcaatcgagcgggcgacgtgatcccgaaggtgctcgacgtggtgctg
gagaagcggcccgctgacgcgaagccctatgagtttccgaccacctgtcccgcctgcggc
agccacgcggtgcgcgaggtcaatccacgcaccggcaaggaggatgcggtgcgccgctgc
acgggcggcctcatctgtccggcgcaggcccgcgagcgcctgaagcatttcgtgtcccgc
aacgctttcgacatcgaaggcatgggcgagcagcgcatcgacgaattctacgaggaaggc
ctcgtccagcgcccgcaggacatcttcaccctgcaggcacgcaatgcacgcagcctcaag
cgcctggagaatcgggagggatggggcgagacgagcgcgaggaacctgttcgccgccatc
gaggcgcgccgctcgattacgctgaaccgcttcgtcttcgccctcggcatcccgcatatc
ggcgagacctcggcgcggctgctcgcgcgccatttcgggaccttcgagcatttgcgcgaa
acggcgaaggccgcagccgatgcgacctccgaggctcatacggaactcaccgccatcggc
ggcattggaccggtcgtggcggaagcggtcgtcgagttcttcaaggaacagcacaacgaa
gagatgctcgacgcgctgctcgctcaggtcacggtcgagccgatggaagcgcctgccgcc
gcgaactcgcccgtggccggcaagaccgtggtgttcacgggctcgctggagcagatgacc
cgcgaggaggcgaaggccatggccgaacggctcggggccaaggtggcgggctccgtgtcg
aagaagacggacatcgtggtggcggggccgggcgccggctccaagctcgccaaggcggcc
gaactcggccttcaggtcatggacgaggacggctggttcgccctcgtcggtcgaaagtga
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