KEGG   Methylovirgula ligni: CWB41_11205
Entry
CWB41_11205       CDS       T05824                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
mlg  Methylovirgula ligni
Pathway
mlg03030  DNA replication
mlg03410  Base excision repair
mlg03420  Nucleotide excision repair
mlg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mlg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CWB41_11205
   03410 Base excision repair
    CWB41_11205
   03420 Nucleotide excision repair
    CWB41_11205
   03430 Mismatch repair
    CWB41_11205
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mlg03032]
    CWB41_11205
   03400 DNA repair and recombination proteins [BR:mlg03400]
    CWB41_11205
Enzymes [BR:mlg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CWB41_11205
DNA replication proteins [BR:mlg03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CWB41_11205
DNA repair and recombination proteins [BR:mlg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CWB41_11205
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CWB41_11205
   MMR (mismatch excision repair)
    DNA ligase
     CWB41_11205
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CWB41_11205
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT Lar_restr_allev Zn_ribbon_SprT
Other DBs
NCBI-ProteinID: QAY96226
LinkDB
Position
2310030..2312117
AA seq 695 aa
MTAGDLAAARAEYGRLGAEIAHHDELYYREDAPVVSDAEYDDLRRRYEALEKAHPEFATE
KSLSKRVGAAPSEKFAKVRHKVPMLSLGNVFADAEVEDFVARVRRFLGLSADAPVAMTAE
PKIDGLSCSLRYEHGELVQAATRGDGYEGEDVTANVKTIGEIPHVLKHAPPAVLEVRGEV
YMTRADFAALNVRQAEAGKPLFANPRNSAAGSLRQLDPAITASRPLHFFAYAWGEVSQMP
AATQMGMLEKFKSYGLPVNKLTALCHSAEELLRRYHDIESRRAALDYDIDGVVYKVDDLA
LQQRLGFVSRAPRWAVAHKFPAHQATTVLRDIEIQVGRTGALTPVARLEPVTVGGVVVSN
ATLHNEDEIARKDIRIGDTVRLQRAGDVIPQILGVVLEQRPKNAEPYKFPHVCPVCGSAA
IREKKDDGSADVVRRCTGGLICKAQAQERLRHFVSRLAFDIEGLGEKQIAQFYADGLITK
PDDIFTLAARDAHAKTRLVEREGYGETSVRNLFAAIEARREIPLNRFIFALGIRHVGETN
ARRLARHFGTFEALRTTARVADEGSEARAEIDNIEGLGGVVAEAVADFFAEKHNEDELDA
LLKYVTVVPMEAVASSSPVAGKTVVFTGALERMTRDEAKAQAERLGAKVASSVSKNTDLI
VAGPGAGTKLAKAKELGIETIDEEDWLKLAAEARE
NT seq 2088 nt   +upstreamnt  +downstreamnt
atgacagccggcgatctggctgcggcgcgggcggaatatggccgcctcggcgctgagatc
gcgcaccatgacgagctctattaccgcgaagatgcgccggtcgtctcggacgcggaatat
gatgatttacgccgccgctacgaggcgctcgaaaaggcgcatcccgaattcgccactgag
aaatcgctcagcaagcgtgtcggcgccgcgccctcggagaagtttgccaaggtccggcac
aaggtcccgatgctctcgctcggcaacgtcttcgccgatgcggaggtggaggatttcgtt
gcccgcgtgcgccgtttcctcggtctctcggccgatgcgcccgtggcgatgacggcggag
ccgaagatcgacggactctcctgttcattgcgctatgagcatggagagcttgtgcaggcg
gcgacccgcggcgacggctacgagggtgaagacgtcaccgcgaacgtaaagaccatcggg
gaaatcccgcatgtgctgaaacacgcgccgccggcggttctcgaagttcggggtgaagtc
tacatgactcgcgcggatttcgccgcgctcaatgtgcggcaggcggaggcaggcaagccg
ttgttcgccaatccgcgcaactccgccgcgggctctttgcgccagcttgatccggcgatc
accgcgtcgcggccgttgcattttttcgcttatgcctggggcgaggtgagtcagatgccg
gccgcgacgcagatgggcatgctcgaaaagttcaagagctatggtctgccggtcaacaag
ctcaccgcgctctgccattcggcggaggaattgctgcggcgctatcatgacatcgaaagc
cgccgcgctgcgctcgactacgatatcgatggcgtcgtctacaaggtcgatgatctcgcc
ctccagcagaggcttggtttcgtttcgcgcgccccgcgctgggcggtggcgcacaagttc
ccggcccatcaggcaacgacggtgctgcgggacatcgagatccaggttggccgcaccggt
gcgctgacgccggtggcgcggcttgaacccgttaccgtcggcggcgtcgtcgtctccaat
gcgacgctgcataacgaagacgagatcgcccgcaaggacatccgcatcggcgatacggtg
cggctgcaacgcgcgggcgatgtcattccgcaaatcctcggcgtcgtgctggaacaacgg
cccaagaatgccgagccctacaaatttccgcatgtctgtccggtctgcggctcggctgcg
atccgtgagaagaaagatgatggcagcgccgatgttgtgcgccgctgcacgggcggcctt
atctgcaaggcgcaggcgcaggagcggctgaggcacttcgtctcgcgtctcgccttcgac
atcgaagggctcggggagaagcagatcgcgcaattctatgccgatggcctgatcaccaag
ccggacgatattttcacgctcgccgcgcgcgacgctcacgccaaaacaaggcttgtcgag
cgcgaaggctatggcgagacgtcggtgcgcaacctgttcgccgcgatcgaggcgcggcgc
gagatcccgctcaatcgcttcattttcgctttgggtatccgccatgtcggcgagaccaat
gcgcgccggctggcgcgccacttcggcacattcgaggctttgcgcacgaccgcgcgggtg
gcggacgagggctcggaagcgcgcgccgagatcgacaatatcgaagggctcggcggggtc
gtggcggaagcggtcgcggatttcttcgccgaaaagcacaatgaggatgaactcgacgcg
ctgctgaaatatgtcaccgtcgtgccgatggaggcggtcgcttcgtcaagccctgtggcg
ggcaagacagtggtcttcaccggcgcgctcgaacgtatgacgcgcgatgaagcgaaggcg
caggccgaacggctgggcgccaaggtcgcttcgtccgtctcgaaaaacaccgatctcatc
gtcgccggccccggcgcgggcacgaagctcgcgaaagccaaggagctgggcatcgagacg
atcgatgaggaggattggctgaagctcgcggccgaggcacgggagtga

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