Methylovirgula ligni: CWB41_11205
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Entry
CWB41_11205 CDS
T05824
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mlg
Methylovirgula ligni
Pathway
mlg03030
DNA replication
mlg03410
Base excision repair
mlg03420
Nucleotide excision repair
mlg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mlg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CWB41_11205
03410 Base excision repair
CWB41_11205
03420 Nucleotide excision repair
CWB41_11205
03430 Mismatch repair
CWB41_11205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mlg03032
]
CWB41_11205
03400 DNA repair and recombination proteins [BR:
mlg03400
]
CWB41_11205
Enzymes [BR:
mlg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CWB41_11205
DNA replication proteins [BR:
mlg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CWB41_11205
DNA repair and recombination proteins [BR:
mlg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CWB41_11205
NER (nucleotide excision repair)
GGR (global genome repair) factors
CWB41_11205
MMR (mismatch excision repair)
DNA ligase
CWB41_11205
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CWB41_11205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Lar_restr_allev
Zn_ribbon_SprT
Motif
Other DBs
NCBI-ProteinID:
QAY96226
LinkDB
All DBs
Position
2310030..2312117
Genome browser
AA seq
695 aa
AA seq
DB search
MTAGDLAAARAEYGRLGAEIAHHDELYYREDAPVVSDAEYDDLRRRYEALEKAHPEFATE
KSLSKRVGAAPSEKFAKVRHKVPMLSLGNVFADAEVEDFVARVRRFLGLSADAPVAMTAE
PKIDGLSCSLRYEHGELVQAATRGDGYEGEDVTANVKTIGEIPHVLKHAPPAVLEVRGEV
YMTRADFAALNVRQAEAGKPLFANPRNSAAGSLRQLDPAITASRPLHFFAYAWGEVSQMP
AATQMGMLEKFKSYGLPVNKLTALCHSAEELLRRYHDIESRRAALDYDIDGVVYKVDDLA
LQQRLGFVSRAPRWAVAHKFPAHQATTVLRDIEIQVGRTGALTPVARLEPVTVGGVVVSN
ATLHNEDEIARKDIRIGDTVRLQRAGDVIPQILGVVLEQRPKNAEPYKFPHVCPVCGSAA
IREKKDDGSADVVRRCTGGLICKAQAQERLRHFVSRLAFDIEGLGEKQIAQFYADGLITK
PDDIFTLAARDAHAKTRLVEREGYGETSVRNLFAAIEARREIPLNRFIFALGIRHVGETN
ARRLARHFGTFEALRTTARVADEGSEARAEIDNIEGLGGVVAEAVADFFAEKHNEDELDA
LLKYVTVVPMEAVASSSPVAGKTVVFTGALERMTRDEAKAQAERLGAKVASSVSKNTDLI
VAGPGAGTKLAKAKELGIETIDEEDWLKLAAEARE
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgacagccggcgatctggctgcggcgcgggcggaatatggccgcctcggcgctgagatc
gcgcaccatgacgagctctattaccgcgaagatgcgccggtcgtctcggacgcggaatat
gatgatttacgccgccgctacgaggcgctcgaaaaggcgcatcccgaattcgccactgag
aaatcgctcagcaagcgtgtcggcgccgcgccctcggagaagtttgccaaggtccggcac
aaggtcccgatgctctcgctcggcaacgtcttcgccgatgcggaggtggaggatttcgtt
gcccgcgtgcgccgtttcctcggtctctcggccgatgcgcccgtggcgatgacggcggag
ccgaagatcgacggactctcctgttcattgcgctatgagcatggagagcttgtgcaggcg
gcgacccgcggcgacggctacgagggtgaagacgtcaccgcgaacgtaaagaccatcggg
gaaatcccgcatgtgctgaaacacgcgccgccggcggttctcgaagttcggggtgaagtc
tacatgactcgcgcggatttcgccgcgctcaatgtgcggcaggcggaggcaggcaagccg
ttgttcgccaatccgcgcaactccgccgcgggctctttgcgccagcttgatccggcgatc
accgcgtcgcggccgttgcattttttcgcttatgcctggggcgaggtgagtcagatgccg
gccgcgacgcagatgggcatgctcgaaaagttcaagagctatggtctgccggtcaacaag
ctcaccgcgctctgccattcggcggaggaattgctgcggcgctatcatgacatcgaaagc
cgccgcgctgcgctcgactacgatatcgatggcgtcgtctacaaggtcgatgatctcgcc
ctccagcagaggcttggtttcgtttcgcgcgccccgcgctgggcggtggcgcacaagttc
ccggcccatcaggcaacgacggtgctgcgggacatcgagatccaggttggccgcaccggt
gcgctgacgccggtggcgcggcttgaacccgttaccgtcggcggcgtcgtcgtctccaat
gcgacgctgcataacgaagacgagatcgcccgcaaggacatccgcatcggcgatacggtg
cggctgcaacgcgcgggcgatgtcattccgcaaatcctcggcgtcgtgctggaacaacgg
cccaagaatgccgagccctacaaatttccgcatgtctgtccggtctgcggctcggctgcg
atccgtgagaagaaagatgatggcagcgccgatgttgtgcgccgctgcacgggcggcctt
atctgcaaggcgcaggcgcaggagcggctgaggcacttcgtctcgcgtctcgccttcgac
atcgaagggctcggggagaagcagatcgcgcaattctatgccgatggcctgatcaccaag
ccggacgatattttcacgctcgccgcgcgcgacgctcacgccaaaacaaggcttgtcgag
cgcgaaggctatggcgagacgtcggtgcgcaacctgttcgccgcgatcgaggcgcggcgc
gagatcccgctcaatcgcttcattttcgctttgggtatccgccatgtcggcgagaccaat
gcgcgccggctggcgcgccacttcggcacattcgaggctttgcgcacgaccgcgcgggtg
gcggacgagggctcggaagcgcgcgccgagatcgacaatatcgaagggctcggcggggtc
gtggcggaagcggtcgcggatttcttcgccgaaaagcacaatgaggatgaactcgacgcg
ctgctgaaatatgtcaccgtcgtgccgatggaggcggtcgcttcgtcaagccctgtggcg
ggcaagacagtggtcttcaccggcgcgctcgaacgtatgacgcgcgatgaagcgaaggcg
caggccgaacggctgggcgccaaggtcgcttcgtccgtctcgaaaaacaccgatctcatc
gtcgccggccccggcgcgggcacgaagctcgcgaaagccaaggagctgggcatcgagacg
atcgatgaggaggattggctgaagctcgcggccgaggcacgggagtga
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